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A

Action - Class in org.intermine.plugin.project

Base class for actions in a project.xml files

Action() - Constructor for class org.intermine.plugin.project.Action

addPostProcess(String, PostProcess) - Method in class org.intermine.plugin.project.Project

Add a post-processing step

addProperty(UserProperty) - Method in class org.intermine.plugin.project.Project

Add a project property.

addSource(String, Source) - Method in class org.intermine.plugin.project.Project

Add a Source object

addUserProperty(UserProperty) - Method in class org.intermine.plugin.project.Action

Add a UserProperty to the Action

E

execute() - Method in class org.intermine.plugin.ant.MergeSourceModelsTask

G

getLocation() - Method in class org.intermine.plugin.project.Source

Get the directory that contains this Source.

getLocation() - Method in class org.intermine.plugin.project.UserProperty

Get the location

getName() - Method in class org.intermine.plugin.project.Source

Get the name of this object.

getName() - Method in class org.intermine.plugin.project.UserProperty

Return the name

getPostProcesses() - Method in class org.intermine.plugin.project.Project

Return a Map from post-process name to PostProcess objects

getProperties() - Method in class org.intermine.plugin.project.Project

Return a list of UserProperty objects for the Project.

getSourceLocations() - Method in class org.intermine.plugin.project.Project

Get a list of directories to search for sources, specified by 'source.location.

getSources() - Method in class org.intermine.plugin.project.Project

Return a Map from source name to Source

getType() - Method in class org.intermine.plugin.project.Project

Return the type of this project

getType() - Method in class org.intermine.plugin.project.Source

Get the type of this object.

getUserProperties() - Method in class org.intermine.plugin.project.Action

Return a list of UserProperty objects.

getValue() - Method in class org.intermine.plugin.project.UserProperty

Set the property value

getVersion() - Method in class org.intermine.plugin.project.PostProcess

Get the version of this object.

getVersion() - Method in class org.intermine.plugin.project.Source

Get the version of this object.

I

isLocation() - Method in class org.intermine.plugin.project.UserProperty

Return true if and only if the location is set

M

MergeSourceModelsTask - Class in org.intermine.plugin.ant

Task to merge additions files from all sources in the project.xml into an intermine XML model.

MergeSourceModelsTask() - Constructor for class org.intermine.plugin.ant.MergeSourceModelsTask

O

org.intermine.plugin.ant - package org.intermine.plugin.ant

org.intermine.plugin.project - package org.intermine.plugin.project

P

PostProcess - Class in org.intermine.plugin.project

A representation of a post-processing production step.

PostProcess() - Constructor for class org.intermine.plugin.project.PostProcess

Project - Class in org.intermine.plugin.project

A class representing the contents of a project.xml file.

Project() - Constructor for class org.intermine.plugin.project.Project

ProjectXmlBinding - Class in org.intermine.plugin.project

Code for reading project.xml files.

S

setExtraModelsEnd(String) - Method in class org.intermine.plugin.ant.MergeSourceModelsTask

The paths containing extra model additions that should be merged last.

setExtraModelsStart(String) - Method in class org.intermine.plugin.ant.MergeSourceModelsTask

The paths containing extra model additions that should be merged first.

setLocation(File) - Method in class org.intermine.plugin.project.Source

Set the location of this Source directory.

setLocation(String) - Method in class org.intermine.plugin.project.UserProperty

Set the property location

setModelFilePath(File) - Method in class org.intermine.plugin.ant.MergeSourceModelsTask

Set the model to add additions to.

setName(String) - Method in class org.intermine.plugin.project.Source

Set the name of this Source.

setName(String) - Method in class org.intermine.plugin.project.UserProperty

Set the name

setProjectXmlPath(File) - Method in class org.intermine.plugin.ant.MergeSourceModelsTask

Set the project.xml file to use when post-processing.

setType(String) - Method in class org.intermine.plugin.project.Project

Set the type of this project.

setType(String) - Method in class org.intermine.plugin.project.Source

Set the name of this Source.

setValue(String) - Method in class org.intermine.plugin.project.UserProperty

Set the property value

setVersion(String) - Method in class org.intermine.plugin.project.PostProcess

Set the version of this Source, e.g.

setVersion(String) - Method in class org.intermine.plugin.project.Source

Set the version of this Source, e.g.

Source - Class in org.intermine.plugin.project

A class to hold information about a source from a project.xml file.

Source() - Constructor for class org.intermine.plugin.project.Source

U

unmarshall(File) - Static method in class org.intermine.plugin.project.ProjectXmlBinding

Create a Project object from a project.xml file.

UserProperty - Class in org.intermine.plugin.project

Bean to hold property elements from project.xml files.

UserProperty() - Constructor for class org.intermine.plugin.project.UserProperty

V

validate(File) - Method in class org.intermine.plugin.project.Project

Validate contents of a project.xml file once it has been unmarshalled.

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