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- ScoredInterval - class in org.jetbrains.bio
- seek(Long) - function in org.jetbrains.bio.BetterSeekableBufferedStream
- seek(Long) - function in org.jetbrains.bio.EndianAwareDataSeekableStream
- seek(Long) - function in org.jetbrains.bio.SeekableDataInput
- seek(Long) - function in org.jetbrains.bio.SeekableDataInput
- SeekableDataInput - class in org.jetbrains.bio
java.io.DataInputinterface extension withseekand additional read methods- set(Integer,Integer,Float) - function in org.jetbrains.bio.big.BedGraphSection
- set(Integer,Float) - function in org.jetbrains.bio.big.VariableStepSection
- setBufferEndOffset(Long) - function in org.jetbrains.bio.BetterSeekableBufferedStream
- setBufferSize(Integer) - function in org.jetbrains.bio.BetterSeekableBufferedStream
- setBufferStartOffset(Long) - function in org.jetbrains.bio.BetterSeekableBufferedStream
- setCount(Long) - function in org.jetbrains.bio.big.BigSummary
- An upper bound on the number of (bases) with actual data.
- setItemRgb(Integer) - function in org.jetbrains.bio.big.ExtendedBedEntry
- The colour of entry in the form R,G,B (e.g.
- setLimit(Long) - function in org.jetbrains.bio.BBRomBuffer
- setLimit(Long) - function in org.jetbrains.bio.HeavyweightRomBuffer
- setLimit(Long) - function in org.jetbrains.bio.LightweightRomBuffer
- setLimit(Long) - function in org.jetbrains.bio.MMBRomBuffer
- setLimit(Long) - function in org.jetbrains.bio.RomBuffer
- setLimit(Long) - function in org.jetbrains.bio.SynchronizedStreamAccessRomBuffer
- setMaxValue(Double) - function in org.jetbrains.bio.big.BigSummary
- Maximum item value.
- setMinValue(Double) - function in org.jetbrains.bio.big.BigSummary
- Minimum item value.
- setOrder(ByteOrder) - function in org.jetbrains.bio.EndianAwareDataSeekableStream
- setOrder(ByteOrder) - function in org.jetbrains.bio.EndianBufferFactory
- setOrder(ByteOrder) - function in org.jetbrains.bio.EndianSynchronizedBufferFactory
- setOrder(ByteOrder) - function in org.jetbrains.bio.EndianThreadSafeBufferFactory
- setOrder(ByteOrder) - function in org.jetbrains.bio.EndianSeekableDataInput
- setOrder(ByteOrder) - function in org.jetbrains.bio.MMBRomBufferFactory
- setOrder(ByteOrder) - function in org.jetbrains.bio.RomBufferFactory
- setPosition(Long) - function in org.jetbrains.bio.BBRomBuffer
- setPosition(Long) - function in org.jetbrains.bio.BetterSeekableBufferedStream
- setPosition(Long) - function in org.jetbrains.bio.HeavyweightRomBuffer
- setPosition(Long) - function in org.jetbrains.bio.LightweightRomBuffer
- setPosition(Long) - function in org.jetbrains.bio.MMBRomBuffer
- setPosition(Long) - function in org.jetbrains.bio.RomBuffer
- setPosition(Long) - function in org.jetbrains.bio.SynchronizedStreamAccessRomBuffer
- setStackTrace(Array) - function in kotlin.Throwable
- setSum(Double) - function in org.jetbrains.bio.big.BigSummary
- Sum of values for each base.
- setSumSquares(Double) - function in org.jetbrains.bio.big.BigSummary
- Sum of squares for each base.
- setThickEnd(Integer) - function in org.jetbrains.bio.big.ExtendedBedEntry
- The ending position at which the feature is drawn thickly.
- setThickStart(Integer) - function in org.jetbrains.bio.big.ExtendedBedEntry
- The starting position at which the feature is drawn thickly.
- skip(Long) - function in java.io.InputStream
- skipBytes(Integer) - function in org.jetbrains.bio.EndianAwareDataSeekableStream
- skipBytes(Integer) - function in java.io.DataInput
- skipBytes(Integer) - function in org.jetbrains.bio.OrderedDataOutput
- skipBytes(Integer) - function in java.io.DataInput
- SNAPPY - enum entry in org.jetbrains.bio.CompressionType
- splice(Integer) - function in org.jetbrains.bio.big.BedGraphSection
- Splices a section into sub-section of size at most java.lang.Short.MAX_VALUE.
- splice(Integer) - function in org.jetbrains.bio.big.WigSection
- Splices a section into sub-section of size at most java.lang.Short.MAX_VALUE.
- splice(Integer) - function in org.jetbrains.bio.big.VariableStepSection
- Splices a section into sub-section of size at most java.lang.Short.MAX_VALUE.
- splice(Integer) - function in org.jetbrains.bio.big.FixedStepSection
- Splices a section into sub-section of size at most java.lang.Short.MAX_VALUE.
- spliterator() - function in kotlin.collections.Iterable
- spliterator() - function in kotlin.collections.Iterable
- spliterator() - function in kotlin.collections.Iterable
- spliterator() - function in kotlin.collections.Iterable
- summarize(String,Integer,Integer,Integer,Boolean,Function0) - function in org.jetbrains.bio.big.BigFile
- Splits the interval
[startOffset, endOffset)intonumBinsnon-intersecting sub-intervals (aka bins) and computes a summary of the data values for each bin. - summarize(String,Integer,Integer,Integer,Boolean,Function0) - function in org.jetbrains.bio.big.BigFile
- Splits the interval
[startOffset, endOffset)intonumBinsnon-intersecting sub-intervals (aka bins) and computes a summary of the data values for each bin. - summarize(String,Integer,Integer,Integer,Boolean,Function0) - function in org.jetbrains.bio.big.BigFile
- Splits the interval
[startOffset, endOffset)intonumBinsnon-intersecting sub-intervals (aka bins) and computes a summary of the data values for each bin. - summarize(String,Integer,Integer,Integer,Function0) - function in org.jetbrains.bio.tdf.TdfFile
- Returns a summary of the data within a given interval.
- SynchronizedStreamAccessRomBuffer - class in org.jetbrains.bio
- Buffer implements thread safe in terms of underlying stream read/seek operations.