G-index

A B C D E F G H I L M N O P Q R S T U V W

G

get(Integer,Integer) - function in org.jetbrains.bio.big.BedGraphSection

get(Integer) - function in org.jetbrains.bio.big.VariableStepSection

get(Integer) - function in org.jetbrains.bio.big.FixedStepSection

get(Integer) - function in org.jetbrains.bio.tdf.TdfSummary

get(String) - function in org.jetbrains.bio.tdf.TdfGroup

getAbsent() - function in org.jetbrains.bio.CompressionType

getAttributes() - function in org.jetbrains.bio.tdf.TdfDataset

getAttributes() - function in org.jetbrains.bio.tdf.TdfGroup

getBlockCount() - function in org.jetbrains.bio.big.ExtendedBedEntry

getBlockSizes() - function in org.jetbrains.bio.big.ExtendedBedEntry

getBlockStarts() - function in org.jetbrains.bio.big.ExtendedBedEntry

getBufferEndOffset() - function in org.jetbrains.bio.BetterSeekableBufferedStream

getBufferSize() - function in org.jetbrains.bio.BetterSeekableBufferedStream

getBufferStartOffset() - function in org.jetbrains.bio.BetterSeekableBufferedStream

getBuild() - function in org.jetbrains.bio.tdf.TdfFile

Genome build, e.g.

getCause() - function in org.jetbrains.bio.big.BedEntryUnpackException

getChrom() - function in org.jetbrains.bio.big.BedEntry

Chromosome name, e.g.

getChrom() - function in org.jetbrains.bio.big.ExtendedBedEntry

Chromosome name, e.g.

getChrom() - function in org.jetbrains.bio.big.BedGraphSection

Human-readable chromosome name, e.g.

getChrom() - function in org.jetbrains.bio.big.WigSection

Human-readable chromosome name, e.g.

getChrom() - function in org.jetbrains.bio.big.VariableStepSection

Human-readable chromosome name, e.g.

getChrom() - function in org.jetbrains.bio.big.FixedStepSection

Human-readable chromosome name, e.g.

getChromIx() - function in org.jetbrains.bio.big.Offset

Chromosome ID as defined by the B+ index.

getChromosomes() - function in org.jetbrains.bio.big.BigBedFile

An in-memory mapping of chromosome IDs to chromosome names.

getChromosomes() - function in org.jetbrains.bio.big.BigFile

An in-memory mapping of chromosome IDs to chromosome names.

getChromosomes() - function in org.jetbrains.bio.big.BigWigFile

An in-memory mapping of chromosome IDs to chromosome names.

getCompressed() - function in org.jetbrains.bio.tdf.TdfFile

Whether the data sections are compressed with DEFLATE.

getCompression() - function in org.jetbrains.bio.big.BigBedFile

getCompression() - function in org.jetbrains.bio.big.BigFile

getCompression() - function in org.jetbrains.bio.big.BigWigFile

getCount() - function in org.jetbrains.bio.big.BigSummary

An upper bound on the number of (bases) with actual data.

getData() - function in org.jetbrains.bio.tdf.TdfBedTile

getData() - function in org.jetbrains.bio.tdf.TdfFixedTile

getData() - function in org.jetbrains.bio.tdf.TdfVaryTile

getDataOffset() - function in org.jetbrains.bio.big.RTreeIndexLeaf

getDataset(String,Integer,WindowFunction) - function in org.jetbrains.bio.tdf.TdfFile

getDataSetNames() - function in org.jetbrains.bio.tdf.TdfFile

getDataSize() - function in org.jetbrains.bio.big.RTreeIndexLeaf

getDeclaringClass() - function in kotlin.Enum

getDEFAULT_BUFFER_SIZE() - function in org.jetbrains.bio.BetterSeekableBufferedStream.Companion

getDoubleBuffer() - function in org.jetbrains.bio.BetterSeekableBufferedStream

getEnd() - function in org.jetbrains.bio.ScoredInterval

getEnd() - function in org.jetbrains.bio.big.BedEntry

0-based end offset (exclusive).

getEnd() - function in org.jetbrains.bio.big.ExtendedBedEntry

0-based end offset (exclusive).

getEnd() - function in org.jetbrains.bio.big.BedGraphSection

getEnd() - function in org.jetbrains.bio.big.WigSection

End offset of the rightmost interval in the section.

getEnd() - function in org.jetbrains.bio.big.VariableStepSection

getEnd() - function in org.jetbrains.bio.big.FixedStepSection

getEndianOutput() - function in org.jetbrains.bio.OrderedDataOutput

getEndOffset(Integer) - function in org.jetbrains.bio.tdf.TdfTile

getEndOffset(Integer) - function in org.jetbrains.bio.tdf.TdfBedTile

getEndOffset(Integer) - function in org.jetbrains.bio.tdf.TdfFixedTile

getEndOffset(Integer) - function in org.jetbrains.bio.tdf.TdfVaryTile

getEnds() - function in org.jetbrains.bio.tdf.TdfBedTile

getEntry() - function in org.jetbrains.bio.big.BedEntryUnpackException

getExtraFields() - function in org.jetbrains.bio.big.ExtendedBedEntry

Additional BED values.

getField(Integer,Integer,Integer) - function in org.jetbrains.bio.big.ExtendedBedEntry

Returns a i-th field of a Bed entry.

getFieldIdx() - function in org.jetbrains.bio.big.BedEntryUnpackException

getGroup(String) - function in org.jetbrains.bio.tdf.TdfFile

getGroupNames() - function in org.jetbrains.bio.tdf.TdfFile

getId() - function in org.jetbrains.bio.big.BPlusLeaf

Unique chromosome identifier.

getId() - function in org.jetbrains.bio.tdf.TrackType

getInterval() - function in org.jetbrains.bio.big.RTreeIndexLeaf

getItemRgb() - function in org.jetbrains.bio.big.ExtendedBedEntry

The colour of entry in the form R,G,B (e.g.

getKey() - function in org.jetbrains.bio.big.BPlusLeaf

Chromosome name, e.g.

getLeft() - function in org.jetbrains.bio.big.Interval

Start offset (inclusive).

getLimit() - function in org.jetbrains.bio.BBRomBuffer

getLimit() - function in org.jetbrains.bio.HeavyweightRomBuffer

getLimit() - function in org.jetbrains.bio.LightweightRomBuffer

getLimit() - function in org.jetbrains.bio.MMBRomBuffer

getLimit() - function in org.jetbrains.bio.RomBuffer

getLimit() - function in org.jetbrains.bio.SynchronizedStreamAccessRomBuffer

getLocalizedMessage() - function in kotlin.Throwable

getMaxLength() - function in org.jetbrains.bio.BBRomBuffer

getMaxLength() - function in org.jetbrains.bio.HeavyweightRomBuffer

getMaxLength() - function in org.jetbrains.bio.LightweightRomBuffer

getMaxLength() - function in org.jetbrains.bio.MMBRomBuffer

getMaxLength() - function in org.jetbrains.bio.RomBuffer

getMaxLength() - function in org.jetbrains.bio.SynchronizedStreamAccessRomBuffer

getMaxValue() - function in org.jetbrains.bio.big.BigSummary

Maximum item value.

getMessage() - function in org.jetbrains.bio.big.BedEntryUnpackException

getMinValue() - function in org.jetbrains.bio.big.BigSummary

Minimum item value.

getName() - function in org.jetbrains.bio.CompressionType

getName() - function in org.jetbrains.bio.big.ExtendedBedEntry

Name of feature.

getName() - function in org.jetbrains.bio.big.BigFile.Type

getName() - function in org.jetbrains.bio.big.WigSection.Type

getName() - function in org.jetbrains.bio.tdf.WindowFunction

getOffset() - function in org.jetbrains.bio.big.Offset

0-based genomic offset.

getOrder() - function in org.jetbrains.bio.BBRomBuffer

getOrder() - function in org.jetbrains.bio.EndianAwareDataSeekableStream

getOrder() - function in org.jetbrains.bio.EndianBufferFactory

getOrder() - function in org.jetbrains.bio.EndianSynchronizedBufferFactory

getOrder() - function in org.jetbrains.bio.EndianThreadSafeBufferFactory

getOrder() - function in org.jetbrains.bio.EndianSeekableDataInput

getOrder() - function in org.jetbrains.bio.HeavyweightRomBuffer

getOrder() - function in org.jetbrains.bio.LightweightRomBuffer

getOrder() - function in org.jetbrains.bio.MMBRomBuffer

getOrder() - function in org.jetbrains.bio.MMBRomBufferFactory

getOrder() - function in org.jetbrains.bio.OrderedDataOutput

getOrder() - function in org.jetbrains.bio.RomBuffer

getOrder() - function in org.jetbrains.bio.RomBufferFactory

getOrder() - function in org.jetbrains.bio.SynchronizedStreamAccessRomBuffer

getOrdinal() - function in org.jetbrains.bio.CompressionType

getOrdinal() - function in org.jetbrains.bio.big.BigFile.Type

getOrdinal() - function in org.jetbrains.bio.big.WigSection.Type

getOrdinal() - function in org.jetbrains.bio.tdf.WindowFunction

getOutput() - function in org.jetbrains.bio.OrderedDataOutput

getPath() - function in org.jetbrains.bio.MMBRomBufferFactory

getPath() - function in org.jetbrains.bio.big.BedFile

getPosition() - function in org.jetbrains.bio.BBRomBuffer

getPosition() - function in org.jetbrains.bio.BetterSeekableBufferedStream

getPosition() - function in org.jetbrains.bio.HeavyweightRomBuffer

getPosition() - function in org.jetbrains.bio.LightweightRomBuffer

getPosition() - function in org.jetbrains.bio.MMBRomBuffer

getPosition() - function in org.jetbrains.bio.RomBuffer

getPosition() - function in org.jetbrains.bio.SynchronizedStreamAccessRomBuffer

getPREFETCH_LEVEL_DETAILED() - function in org.jetbrains.bio.big.BigFile.Companion

getPREFETCH_LEVEL_FAST() - function in org.jetbrains.bio.big.BigFile.Companion

getPREFETCH_LEVEL_OFF() - function in org.jetbrains.bio.big.BigFile.Companion

getRest() - function in org.jetbrains.bio.big.BedEntry

Tab-separated string of additional BED values.

getRight() - function in org.jetbrains.bio.big.Interval

End offset (exclusive).

getScore() - function in org.jetbrains.bio.ScoredInterval

getScore() - function in org.jetbrains.bio.big.ExtendedBedEntry

Feature score

getSize() - function in org.jetbrains.bio.big.BPlusLeaf

Chromosome length in base pairs.

getSize() - function in org.jetbrains.bio.big.BedGraphSection

getSize() - function in org.jetbrains.bio.big.WigSection

The total number of intervals in the section.

getSize() - function in org.jetbrains.bio.big.VariableStepSection

getSize() - function in org.jetbrains.bio.big.FixedStepSection

getSize() - function in org.jetbrains.bio.tdf.TdfTile

Number of data points in a tile.

getSize() - function in org.jetbrains.bio.tdf.TdfBedTile

getSize() - function in org.jetbrains.bio.tdf.TdfFixedTile

getSize() - function in org.jetbrains.bio.tdf.TdfVaryTile

getSource() - function in org.jetbrains.bio.BetterSeekableBufferedStream

getSource() - function in org.jetbrains.bio.big.BigBedFile

getSource() - function in org.jetbrains.bio.big.BigFile

getSource() - function in org.jetbrains.bio.big.BigWigFile

getSource() - function in org.jetbrains.bio.tdf.TdfFile

getSpan() - function in org.jetbrains.bio.big.BedGraphSection

getSpan() - function in org.jetbrains.bio.big.WigSection

Interval width.

getSpan() - function in org.jetbrains.bio.big.VariableStepSection

Interval width.

getSpan() - function in org.jetbrains.bio.big.FixedStepSection

Interval width.

getSpan() - function in org.jetbrains.bio.tdf.TdfFixedTile

getSpan() - function in org.jetbrains.bio.tdf.TdfVaryTile

getStackTrace() - function in kotlin.Throwable

getStart() - function in org.jetbrains.bio.ScoredInterval

getStart() - function in org.jetbrains.bio.big.BedEntry

0-based start offset (inclusive).

getStart() - function in org.jetbrains.bio.big.ExtendedBedEntry

0-based start offset (inclusive).

getStart() - function in org.jetbrains.bio.big.BedGraphSection

getStart() - function in org.jetbrains.bio.big.WigSection

Start offset of the leftmost interval in the section.

getStart() - function in org.jetbrains.bio.big.VariableStepSection

getStart() - function in org.jetbrains.bio.big.FixedStepSection

Start offset of the leftmost interval in the section.

getStart() - function in org.jetbrains.bio.tdf.TdfFixedTile

getStartOffset(Integer) - function in org.jetbrains.bio.tdf.TdfTile

getStartOffset(Integer) - function in org.jetbrains.bio.tdf.TdfBedTile

getStartOffset(Integer) - function in org.jetbrains.bio.tdf.TdfFixedTile

getStartOffset(Integer) - function in org.jetbrains.bio.tdf.TdfVaryTile

getStarts() - function in org.jetbrains.bio.tdf.TdfBedTile

getStarts() - function in org.jetbrains.bio.tdf.TdfVaryTile

getStep() - function in org.jetbrains.bio.big.FixedStepSection

Distance between consecutive intervals.

getStrand() - function in org.jetbrains.bio.big.ExtendedBedEntry

or – or . for unknown.

getSum() - function in org.jetbrains.bio.big.BigSummary

Sum of values for each base.

getSumSquares() - function in org.jetbrains.bio.big.BigSummary

Sum of squares for each base.

getSuppressed() - function in kotlin.Throwable

getThickEnd() - function in org.jetbrains.bio.big.ExtendedBedEntry

The ending position at which the feature is drawn thickly.

getThickStart() - function in org.jetbrains.bio.big.ExtendedBedEntry

The starting position at which the feature is drawn thickly.

getTile(TdfDataset,Integer) - function in org.jetbrains.bio.tdf.TdfFile

getTileCount() - function in org.jetbrains.bio.tdf.TdfDataset

getTilePositions() - function in org.jetbrains.bio.tdf.TdfDataset

getTileSizes() - function in org.jetbrains.bio.tdf.TdfDataset

getTileWidth() - function in org.jetbrains.bio.tdf.TdfDataset

getTotalSummary() - function in org.jetbrains.bio.big.BigBedFile

Whole-file summary.

getTotalSummary() - function in org.jetbrains.bio.big.BigFile

Whole-file summary.

getTotalSummary() - function in org.jetbrains.bio.big.BigWigFile

Whole-file summary.

getTrackLine() - function in org.jetbrains.bio.tdf.TdfFile

Track description, see BED format spec for details.

getTrackNames() - function in org.jetbrains.bio.tdf.TdfFile

Human-readable track names.

getTrackType() - function in org.jetbrains.bio.tdf.TdfFile

Data type, e.g.

getValue(Integer,Integer) - function in org.jetbrains.bio.tdf.TdfTile

getValue(Integer,Integer) - function in org.jetbrains.bio.tdf.TdfBedTile

getValue(Integer,Integer) - function in org.jetbrains.bio.tdf.TdfFixedTile

getValue(Integer,Integer) - function in org.jetbrains.bio.tdf.TdfVaryTile

getVersion() - function in org.jetbrains.bio.tdf.TdfFile

getWindowFunctions() - function in org.jetbrains.bio.tdf.TdfFile

Window functions supported by the data, e.g.

A B C D E F G H I L M N O P Q R S T U V W