All Implemented Interfaces:: java.io.Closeable , java.lang.AutoCloseable


public class BetterSeekableBufferedStream
extends SeekableStream

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description
`public class`	`BetterSeekableBufferedStream.Companion`

Field Summary

Fields
Modifier and Type	Field	Description
`private Long`	`position`
`private Long`	`bufferStartOffset`
`private Long`	`bufferEndOffset`
`private Integer`	`bufferSize`
`private final Boolean`	`doubleBuffer`

Constructor Summary

Constructors
Constructor	Description
`BetterSeekableBufferedStream(SeekableStream stream, Integer bufferSize, Boolean doubleBuffer)`

Method Summary

Modifier and Type	Method	Description
`Long`	`length()`
`String`	`getSource()`
`Boolean`	`eof()`
`Unit`	`seek(Long position)`
`Long`	`position()`
`Unit`	`close()`
`Integer`	`read(ByteArray buffer, Integer offset, Integer length)`
`Integer`	`read()`
`final Long`	`getPosition()`
`final Long`	`getBufferStartOffset()`
`final Long`	`getBufferEndOffset()`
`final Integer`	`getBufferSize()`
`final Boolean`	`getDoubleBuffer()`
`final Unit`	`setPosition(Long position)`
`final Unit`	`setBufferStartOffset(Long bufferStartOffset)`
`final Unit`	`setBufferEndOffset(Long bufferEndOffset)`
`final Unit`	`setBufferSize(Integer bufferSize)`

Methods inherited from class htsjdk.samtools.seekablestream.SeekableStream
available, mark, markSupported, read, reset, skip
Methods inherited from class java.lang.AutoCloseable
equals, hashCode, toString
Methods inherited from class org.jetbrains.bio.BetterSeekableBufferedStream
readFully
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BetterSeekableBufferedStream

BetterSeekableBufferedStream(SeekableStream stream, Integer bufferSize, Boolean doubleBuffer)

Method Detail

length
```
 Long length()
```

getSource
```
 String getSource()
```

eof
```
 Boolean eof()
```

seek
```
 Unit seek(Long position)
```

position
```
 Long position()
```

close
```
 Unit close()
```

read

 Integer read(ByteArray buffer, Integer offset, Integer length)

read
```
 Integer read()
```

getPosition
```
 final Long getPosition()
```

getBufferStartOffset
```
 final Long getBufferStartOffset()
```

getBufferEndOffset
```
 final Long getBufferEndOffset()
```

getBufferSize
```
 final Integer getBufferSize()
```

getDoubleBuffer
```
 final Boolean getDoubleBuffer()
```

setPosition
```
 final Unit setPosition(Long position)
```

setBufferStartOffset

 final Unit setBufferStartOffset(Long bufferStartOffset)

setBufferEndOffset

 final Unit setBufferEndOffset(Long bufferEndOffset)

setBufferSize

 final Unit setBufferSize(Integer bufferSize)

Class BetterSeekableBufferedStream

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class htsjdk.samtools.seekablestream.SeekableStream

Methods inherited from class java.lang.AutoCloseable

Methods inherited from class org.jetbrains.bio.BetterSeekableBufferedStream

Methods inherited from class java.lang.Object

Constructor Detail

BetterSeekableBufferedStream

Method Detail

length

getSource

eof

seek

position

close

read

read

getPosition

getBufferStartOffset

getBufferEndOffset

getBufferSize

getDoubleBuffer

setPosition

setBufferStartOffset

setBufferEndOffset

setBufferSize