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- All Implemented Interfaces:
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java.io.Closeable,java.lang.AutoCloseable
public final class BigWigFile extends BigFile<WigSection>
Bigger brother of the good-old WIG format.
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Nested Class Summary
Nested Classes Modifier and Type Class Description public classBigWigFile.Companion
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Field Summary
Fields Modifier and Type Field Description private final BigSummarytotalSummaryprivate final TIntObjectMap<String>chromosomesprivate final CompressionTypecompressionprivate final Stringsource
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Method Summary
Modifier and Type Method Description final BigSummarygetTotalSummary()Whole-file summary. final TIntObjectMap<String>getChromosomes()An in-memory mapping of chromosome IDs to chromosome names. final CompressionTypegetCompression()final StringgetSource()-
Methods inherited from class org.jetbrains.bio.big.BigWigFile
close, query, summarize -
Methods inherited from class java.lang.AutoCloseable
equals, hashCode, toString -
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Method Detail
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getTotalSummary
final BigSummary getTotalSummary()
Whole-file summary.
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getChromosomes
final TIntObjectMap<String> getChromosomes()
An in-memory mapping of chromosome IDs to chromosome names.
Because sometimes (always) you don't need a B+ tree for that.
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getCompression
final CompressionType getCompression()
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