```
public final class ExtendedBedEntry

                    
```
An extended representation of a BED file entry.
The BED standard allows 3 up to 12 regular fields (bed3 through bed12) and an arbitrary number of custom extra fields (bedN+K format). The first 12 properties represent the regular fields (default values are used to stand in for the missing data). extraFields property stores the extra fields as a String array.

Field Summary

Fields
Modifier and Type	Field	Description
`private final String`	`chrom`
`private final Integer`	`start`
`private final Integer`	`end`
`private final String`	`name`
`private final Integer`	`score`
`private final Character`	`strand`
`private Integer`	`thickStart`
`private Integer`	`thickEnd`
`private Integer`	`itemRgb`
`private final Integer`	`blockCount`
`private final IntArray`	`blockSizes`
`private final IntArray`	`blockStarts`
`private final Array<String>`	`extraFields`

Constructor Summary

Constructors
Constructor	Description
`ExtendedBedEntry(String chrom, Integer start, Integer end, String name, Integer score, Character strand, Integer thickStart, Integer thickEnd, Integer itemRgb, Integer blockCount, IntArray blockSizes, IntArray blockStarts, Array<String> extraFields)`

Method Summary

Modifier and Type	Method	Description
`Boolean`	`equals(Object other)`
`Integer`	`hashCode()`
`String`	`toString()`
`final BedEntry`	`pack(Byte fieldsNumber, Integer extraFieldsNumber, Character delimiter)`	Convert to BedEntry.
`final ArrayList<String>`	`rest(Byte fieldsNumber, Integer extraFieldsNumber)`	List of optional fields (all except the obligatory first three) for BED entry, same fields as in BedEntry.rest after pack.
`final Object`	`getField(Integer i, Integer fieldsNumber, Integer extraFieldsNumber)`	Returns a i-th field of a Bed entry.
`final String`	`component1()`
`final Integer`	`component2()`
`final Integer`	`component3()`
`final String`	`component4()`
`final Integer`	`component5()`
`final Character`	`component6()`
`final Integer`	`component7()`
`final Integer`	`component8()`
`final Integer`	`component9()`
`final Integer`	`component10()`
`final IntArray`	`component11()`
`final IntArray`	`component12()`
`final Array<String>`	`component13()`
`final ExtendedBedEntry`	`copy(String chrom, Integer start, Integer end, String name, Integer score, Character strand, Integer thickStart, Integer thickEnd, Integer itemRgb, Integer blockCount, IntArray blockSizes, IntArray blockStarts, Array<String> extraFields)`
`final String`	`getChrom()`	Chromosome name, e.g.
`final Integer`	`getStart()`	0-based start offset (inclusive).
`final Integer`	`getEnd()`	0-based end offset (exclusive).
`final String`	`getName()`	Name of feature.
`final Integer`	`getScore()`	Feature score
`final Character`	`getStrand()`	or – or . for unknown.
`final Integer`	`getThickStart()`	The starting position at which the feature is drawn thickly.
`final Integer`	`getThickEnd()`	The ending position at which the feature is drawn thickly.
`final Integer`	`getItemRgb()`	The colour of entry in the form R,G,B (e.g.
`final Integer`	`getBlockCount()`
`final IntArray`	`getBlockSizes()`
`final IntArray`	`getBlockStarts()`
`final Array<String>`	`getExtraFields()`	Additional BED values.
`final Unit`	`setThickStart(Integer thickStart)`	The starting position at which the feature is drawn thickly.
`final Unit`	`setThickEnd(Integer thickEnd)`	The ending position at which the feature is drawn thickly.
`final Unit`	`setItemRgb(Integer itemRgb)`	The colour of entry in the form R,G,B (e.g.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - ExtendedBedEntry
```
ExtendedBedEntry(String chrom, Integer start, Integer end, String name, Integer score, Character strand, Integer thickStart, Integer thickEnd, Integer itemRgb, Integer blockCount, IntArray blockSizes, IntArray blockStarts, Array<String> extraFields)
```
- Method Detail
  - equals
```
 Boolean equals(Object other)
```
  - hashCode
```
 Integer hashCode()
```
  - toString
```
 String toString()
```
  - pack
```
 final BedEntry pack(Byte fieldsNumber, Integer extraFieldsNumber, Character delimiter)
```
    Convert to BedEntry.
    Intended as an inverse for BedEntry.unpack. Packs the optional fields (every field except the obligatory first three ones, chrom, start and end) in BedEntry.rest.
    
    Parameters:
    
    fieldsNumber - BED format fields number to serialize (3..
    
    extraFieldsNumber - BED+ format extra fields number to serialize, if null serialize all extra fields
    
    delimiter - Custom delimiter for malformed data
  - rest
```
 final ArrayList<String> rest(Byte fieldsNumber, Integer extraFieldsNumber)
```
    List of optional fields (all except the obligatory first three) for BED entry, same fields as in BedEntry.rest after pack.
    Values in string differs from original values because converted to string.
    
    Parameters:
    
    fieldsNumber - BED format fields number to serialize (3..
    
    extraFieldsNumber - BED+ format extra fields number to serialize, if null serialize all extra fields
  - getField
```
 final Object getField(Integer i, Integer fieldsNumber, Integer extraFieldsNumber)
```
    Returns a i-th field of a Bed entry.
    Since ExtendedBedEntry is format-agnostic, it doesn't actually know which field is i-th, so we have to provide fieldsNumber and extraFieldsNumber. Returns an instance of a correct type (Int, String etc.) or null for missing and out of bounds fields. This method is useful for minimizing the number of conversions to and from String.
    
    Parameters:
    
    i - the index of the field being queried (zero-based)
    
    fieldsNumber - the number of regular BED fields (N in bedN+K notation)
    
    extraFieldsNumber - the number of extra BED fields (0 for bedN, K for bedN+K, null for bedN+).
  - component1
```
 final String component1()
```
  - component2
```
 final Integer component2()
```
  - component3
```
 final Integer component3()
```
  - component4
```
 final String component4()
```
  - component5
```
 final Integer component5()
```
  - component6
```
 final Character component6()
```
  - component7
```
 final Integer component7()
```
  - component8
```
 final Integer component8()
```
  - component9
```
 final Integer component9()
```
  - component10
```
 final Integer component10()
```
  - component11
```
 final IntArray component11()
```
  - component12
```
 final IntArray component12()
```
  - component13
```
 final Array<String> component13()
```
  - copy
```
 final ExtendedBedEntry copy(String chrom, Integer start, Integer end, String name, Integer score, Character strand, Integer thickStart, Integer thickEnd, Integer itemRgb, Integer blockCount, IntArray blockSizes, IntArray blockStarts, Array<String> extraFields)
```
  - getChrom
```
 final String getChrom()
```
    Chromosome name, e.g. "chr9".
  - getStart
```
 final Integer getStart()
```
    0-based start offset (inclusive).
  - getEnd
```
 final Integer getEnd()
```
    0-based end offset (exclusive).
  - getName
```
 final String getName()
```
    Name of feature.
  - getScore
```
 final Integer getScore()
```
    Feature score
  - getStrand
```
 final Character getStrand()
```
    or – or . for unknown.
  - getThickStart
```
 final Integer getThickStart()
```
    The starting position at which the feature is drawn thickly.
  - getThickEnd
```
 final Integer getThickEnd()
```
    The ending position at which the feature is drawn thickly.
  - getItemRgb
```
 final Integer getItemRgb()
```
    The colour of entry in the form R,G,B (e.g. 255,0,0).
  - getBlockCount
```
 final Integer getBlockCount()
```
  - getBlockSizes
```
 final IntArray getBlockSizes()
```
  - getBlockStarts
```
 final IntArray getBlockStarts()
```
  - getExtraFields
```
 final Array<String> getExtraFields()
```
    Additional BED values.
  - setThickStart
```
 final Unit setThickStart(Integer thickStart)
```
    The starting position at which the feature is drawn thickly.
  - setThickEnd
```
 final Unit setThickEnd(Integer thickEnd)
```
    The ending position at which the feature is drawn thickly.
  - setItemRgb
```
 final Unit setItemRgb(Integer itemRgb)
```
    The colour of entry in the form R,G,B (e.g. 255,0,0).

Class ExtendedBedEntry

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

ExtendedBedEntry

Method Detail

equals

hashCode

toString

pack

rest

getField

component1

component2

component3

component4

component5

component6

component7

component8

component9

component10

component11

component12

component13

copy

getChrom

getStart

getEnd

getName

getScore

getStrand

getThickStart

getThickEnd

getItemRgb

getBlockCount

getBlockSizes

getBlockStarts

getExtraFields

setThickStart

setThickEnd

setItemRgb