Constructor Detail

• VariableStepSection

  VariableStepSection(String chrom, Integer span, TIntList positions, TFloatList values)

Method Detail

• set

   final Unit set(Integer pos, Float value)

• get

   final Float get(Integer pos)

• query

   Sequence<ScoredInterval> query(Integer from, Integer to)

  Returns a intervals contained within a given semi-interval.

  Parameters:

  from - inclusive

  to - exclusive

• splice

   Sequence<VariableStepSection> splice(Integer max)

  Splices a section into sub-section of size at most java.lang.Short.MAX_VALUE.

• toString

   String toString()

• equals

   Boolean equals(Object other)

• hashCode

   Integer hashCode()

• component1

   final String component1()

• component2

   final Integer component2()

• copy

   final VariableStepSection copy(String chrom, Integer span, TIntList positions, TFloatList values)

• getSize

   Integer getSize()

• getStart

   Integer getStart()

• getEnd

   Integer getEnd()

• getChrom

   String getChrom()

  Human-readable chromosome name, e.g. "chr".

• getSpan

   Integer getSpan()

  Interval width.