Method Detail

• isEmpty

   Boolean isEmpty()

• query

   Sequence<ScoredInterval> query()

  Returns a list with all intervals in the section.

• query

   abstract Sequence<ScoredInterval> query(Integer from, Integer to)

  Returns a intervals contained within a given semi-interval.

  Parameters:

  from - inclusive

  to - exclusive

• splice

   abstract Sequence<WigSection> splice(Integer max)

  Splices a section into sub-section of size at most java.lang.Short.MAX_VALUE.

• compareTo

   Integer compareTo(WigSection other)

• getChrom

   abstract String getChrom()

  Human-readable chromosome name, e.g. "chr".

• getSpan

   abstract Integer getSpan()

  Interval width.

• getStart

   abstract Integer getStart()

  Start offset of the leftmost interval in the section.

• getEnd

   abstract Integer getEnd()

  End offset of the rightmost interval in the section. Note that we use semi-closed intervals, thus the returned value is not included on the track.

• getSize

   abstract Integer getSize()

  The total number of intervals in the section.