Package org.lifstools.jgoslin.cli

Class CmdLineParser

java.lang.Object

org.lifstools.jgoslin.cli.CmdLineParser

public class CmdLineParser
extends Object

Create a new command line parser for parsing of lipid names.

Author:

Dominik Kopczynski, Nils Hoffmann

Field Summary

Fields

Modifier and Type	Field	Description
static final String	LIPIDMAPS_CLASS_REGEXP

Constructor Summary

Constructors

Constructor	Description
CmdLineParser()

Method Summary

Modifier and Type	Method	Description
protected static String	addGrammarOption(org.apache.commons.cli.Options options)
protected static String	addHelpOption(org.apache.commons.cli.Options options)
protected static String	addLipidFileInputOption(org.apache.commons.cli.Options options)
protected static String	addLipidNameInputOption(org.apache.commons.cli.Options options)
protected static String	addOutputToFileOption(org.apache.commons.cli.Options options)
protected static String	addStripWhitespaceOption(org.apache.commons.cli.Options options)
protected static String	addVersionOption(org.apache.commons.cli.Options options)
static void	main(String[] args)	Runs the command line parser for jgoslin, including validation.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

LIPIDMAPS_CLASS_REGEXP

public static final String LIPIDMAPS_CLASS_REGEXP

See Also:

• Constant Field Values

Constructor Details

CmdLineParser

public CmdLineParser()

Method Details

main

public static void main(String[] args)
                 throws Exception

Runs the command line parser for jgoslin, including validation.

Run with the -h or --help option to see more options.

Parameters:

args - an array of String lipid names.

Throws:

Exception - if any unexpected errors occur.

addLipidFileInputOption

protected static String addLipidFileInputOption(org.apache.commons.cli.Options options)

addLipidNameInputOption

protected static String addLipidNameInputOption(org.apache.commons.cli.Options options)

addVersionOption

protected static String addVersionOption(org.apache.commons.cli.Options options)

addHelpOption

protected static String addHelpOption(org.apache.commons.cli.Options options)

addOutputToFileOption

protected static String addOutputToFileOption(org.apache.commons.cli.Options options)

addStripWhitespaceOption

protected static String addStripWhitespaceOption(org.apache.commons.cli.Options options)

addGrammarOption

protected static String addGrammarOption(org.apache.commons.cli.Options options)