Uses of Class
org.lifstools.jgoslin.domain.ElementTable

Packages that use ElementTable

Package	Description
org.lifstools.jgoslin.domain	This package contains the main common domain models for lipids.

Uses of ElementTable in org.lifstools.jgoslin.domain

Fields in org.lifstools.jgoslin.domain declared as ElementTable

Modifier and Type	Field	Description
protected ElementTable	FunctionalGroup.elements
final ElementTable	LipidClassMeta.elements

Fields in org.lifstools.jgoslin.domain with type parameters of type ElementTable

Modifier and Type	Field	Description
static final Map<String,ElementTable>	Adduct.ADDUCTS

Methods in org.lifstools.jgoslin.domain that return ElementTable

Modifier and Type	Method	Description
ElementTable	FunctionalGroup.computeAndCopyElements()
ElementTable	ElementTable.copy()	Copy all entries in this element table.
ElementTable	Adduct.getElements()
ElementTable	FunctionalGroup.getElements()
ElementTable	Headgroup.getElements()
ElementTable	LipidAdduct.getElements()
ElementTable	LipidClassMeta.getElements()
ElementTable	LipidMolecularSpecies.getElements()
ElementTable	LipidSpecies.getElements()
ElementTable	LipidSpeciesInfo.getElements()
ElementTable	FattyAcid.getFunctionalGroupElements()
ElementTable	FunctionalGroup.getFunctionalGroupElements()
static ElementTable	ElementTable.of(Map.Entry<Element,Integer>... entries)	Create a new element table from the provided entries.

Methods in org.lifstools.jgoslin.domain with parameters of type ElementTable

Modifier and Type	Method	Description
void	ElementTable.add(ElementTable elements)	Add all elements and counts to those in this element table.
void	ElementTable.add(ElementTable elements, int multiplier)	Add all alements and counts to those in this element table, but use the count argument to multiply count values in the provided table.
void	FunctionalGroup.setElements(ElementTable elements)

Constructors in org.lifstools.jgoslin.domain with parameters of type ElementTable

Modifier	Constructor	Description
	FunctionalGroup(String _name, int _position, int _count, DoubleBonds _double_bonds, boolean _is_atomic, String _stereochemistry, ElementTable _elements, HashMap<String,ArrayList<FunctionalGroup>> _functional_groups, KnownFunctionalGroups knownFunctionalGroups)
	FunctionalGroup(String _name, int _position, int _count, DoubleBonds _double_bonds, boolean _is_atomic, String _stereochemistry, ElementTable _elements, KnownFunctionalGroups knownFunctionalGroups)
	HeadgroupDecorator(String _name, int _position, int _count, ElementTable _elements, boolean _suffix, KnownFunctionalGroups knownFunctionalGroups)
	HeadgroupDecorator(String _name, int _position, int _count, ElementTable _elements, boolean _suffix, LipidLevel _level, KnownFunctionalGroups knownFunctionalGroups)
	HeadgroupDecorator(String _name, int _position, int _count, ElementTable _elements, KnownFunctionalGroups knownFunctionalGroups)
	LipidClassMeta(LipidCategory lipidCategory, String lipidClassName, String description, int maxNumFa, int possibleNumFa, Set<String> specialCases, ElementTable elements, List<String> synonyms)	Create a new lipid class meta instance.