Package org.lifstools.jgoslin.domain

Class AcylAlkylGroup

java.lang.Object

org.lifstools.jgoslin.domain.FunctionalGroup

org.lifstools.jgoslin.domain.AcylAlkylGroup

public final class AcylAlkylGroup
extends FunctionalGroup

An acyl alkyl group as a functional group.

Author:

Dominik Kopczynski, Nils Hoffmann

Field Summary

Fields inherited from class org.lifstools.jgoslin.domain.FunctionalGroup

atomic, count, doubleBonds, elements, functionalGroups, knownFunctionalGroups, name, position, ringStereo, stereochemistry

Constructor Summary

Constructors

Constructor	Description
AcylAlkylGroup(FattyAcid _fa, int _position, int _count, boolean _alkyl, boolean _N_bond, KnownFunctionalGroups knownFunctionalGroups)
AcylAlkylGroup(FattyAcid _fa, int _position, int _count, boolean _alkyl, KnownFunctionalGroups knownFunctionalGroups)
AcylAlkylGroup(FattyAcid _fa, KnownFunctionalGroups knownFunctionalGroups)

Method Summary

Modifier and Type	Method	Description
FunctionalGroup	copy()
boolean	isAlkyl()
boolean	isNitrogenBond()
void	setAlkyl(boolean alkyl)
void	setNitrogenBond(boolean _N_bond)
String	toString(LipidLevel level)

Methods inherited from class org.lifstools.jgoslin.domain.FunctionalGroup

addPosition, computeAndCopyElements, computeElements, getCount, getDoubleBonds, getElements, getFunctionalGroupElements, getFunctionalGroups, getFunctionalGroupsInternal, getName, getNDoubleBonds, getPosition, getRingStereo, getStereochemistry, getTotalFunctionalGroupCount, isAtomic, setAtomic, setCount, setDoubleBonds, setElements, setFunctionalGroups, setName, setPosition, setRingStereo, setStereochemistry, shiftPositions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AcylAlkylGroup

public AcylAlkylGroup(FattyAcid _fa,
 KnownFunctionalGroups knownFunctionalGroups)

AcylAlkylGroup

public AcylAlkylGroup(FattyAcid _fa,
 int _position,
 int _count,
 boolean _alkyl,
 KnownFunctionalGroups knownFunctionalGroups)

AcylAlkylGroup

public AcylAlkylGroup(FattyAcid _fa,
 int _position,
 int _count,
 boolean _alkyl,
 boolean _N_bond,
 KnownFunctionalGroups knownFunctionalGroups)

Method Details

copy

public FunctionalGroup copy()

Overrides:

copy in class FunctionalGroup

setAlkyl

public void setAlkyl(boolean alkyl)

isAlkyl

public boolean isAlkyl()

setNitrogenBond

public void setNitrogenBond(boolean _N_bond)

isNitrogenBond

public boolean isNitrogenBond()

toString

public String toString(LipidLevel level)

Overrides:

toString in class FunctionalGroup