Package org.lifstools.jgoslin.parser

Class HmdbParserEventHandler

java.lang.Object

org.lifstools.jgoslin.parser.BaseParserEventHandler<LipidAdduct>

org.lifstools.jgoslin.parser.LipidBaseParserEventHandler

org.lifstools.jgoslin.parser.HmdbParserEventHandler

public class HmdbParserEventHandler
extends LipidBaseParserEventHandler

Event handler implementation for the HmdbParser.

Author:

Dominik Kopczynski, Nils Hoffmann

Field Summary

Fields inherited from class org.lifstools.jgoslin.parser.LipidBaseParserEventHandler

adduct, currentFa, faList, headGroup, headgroupDecorators, knownFunctionalGroups, lcb, level, SP_EXCEPTION_CLASSES, useHeadGroup

Fields inherited from class org.lifstools.jgoslin.parser.BaseParserEventHandler

content, errorMessage, registeredEvents, ruleNames

Constructor Summary

Constructors

Constructor	Description
HmdbParserEventHandler(KnownFunctionalGroups knownFunctionalGroups)	Create a new HmdbParserEventHandler.

Method Summary

Modifier and Type	Method	Description
protected void	resetParser(TreeNode node)

Methods inherited from class org.lifstools.jgoslin.parser.LipidBaseParserEventHandler

assembleLipid, prepareHeadgroupAndChecks, setLipidLevel, spRegularLcb

Methods inherited from class org.lifstools.jgoslin.parser.BaseParserEventHandler

getErrorMessage, handleEvent, sanityCheck

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

HmdbParserEventHandler

public HmdbParserEventHandler(KnownFunctionalGroups knownFunctionalGroups)

Create a new HmdbParserEventHandler.

Parameters:

knownFunctionalGroups - the known functional groups

Method Details

resetParser

protected void resetParser(TreeNode node)

Specified by:

resetParser in class BaseParserEventHandler<LipidAdduct>