Package org.lifstools.jgoslin.parser

Class SwissLipidsParserEventHandler

java.lang.Object

org.lifstools.jgoslin.parser.BaseParserEventHandler<LipidAdduct>

org.lifstools.jgoslin.parser.LipidBaseParserEventHandler

org.lifstools.jgoslin.parser.SwissLipidsParserEventHandler

public class SwissLipidsParserEventHandler
extends LipidBaseParserEventHandler

Event handler implementation for the SwissLipidsParser.

Author:

Dominik Kopczynski, Nils Hoffmann

Field Summary

Fields

Modifier and Type	Field	Description
String	dbCistrans
int	dbPosition
int	suffixNumber

Fields inherited from class org.lifstools.jgoslin.parser.LipidBaseParserEventHandler

adduct, currentFa, faList, headGroup, headgroupDecorators, knownFunctionalGroups, lcb, level, SP_EXCEPTION_CLASSES, useHeadGroup

Fields inherited from class org.lifstools.jgoslin.parser.BaseParserEventHandler

content, errorMessage, registeredEvents, ruleNames

Constructor Summary

Constructors

Constructor	Description
SwissLipidsParserEventHandler(KnownFunctionalGroups knownFunctionalGroups)	Create a new SwissLipidsParserEventHandler.

Method Summary

Modifier and Type	Method	Description
protected void	resetParser(TreeNode node)

Methods inherited from class org.lifstools.jgoslin.parser.LipidBaseParserEventHandler

assembleLipid, prepareHeadgroupAndChecks, setLipidLevel, spRegularLcb

Methods inherited from class org.lifstools.jgoslin.parser.BaseParserEventHandler

getErrorMessage, handleEvent, sanityCheck

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

dbPosition

public int dbPosition

dbCistrans

public String dbCistrans

suffixNumber

public int suffixNumber

Constructor Details

SwissLipidsParserEventHandler

public SwissLipidsParserEventHandler(KnownFunctionalGroups knownFunctionalGroups)

Create a new SwissLipidsParserEventHandler.

Parameters:

knownFunctionalGroups - the known functional groups

Method Details

resetParser

protected void resetParser(TreeNode node)

Specified by:

resetParser in class BaseParserEventHandler<LipidAdduct>