Package org.lifstools.jgoslin.domain

Class CarbonChain

java.lang.Object

org.lifstools.jgoslin.domain.FunctionalGroup

org.lifstools.jgoslin.domain.CarbonChain

public final class CarbonChain
extends FunctionalGroup

A linear hydrocarbon chain as a functional group.

Author:

Dominik Kopczynski, Nils Hoffmann

Field Summary

Fields inherited from class org.lifstools.jgoslin.domain.FunctionalGroup

atomic, count, doubleBonds, elements, functionalGroups, knownFunctionalGroups, name, numAtomsAndBonds, position, ringStereo, stereochemistry

Constructor Summary

Constructors

Constructor	Description
CarbonChain(FattyAcid _fa, int _position, int _count, KnownFunctionalGroups knownFunctionalGroups)
CarbonChain(FattyAcid _fa, int _position, KnownFunctionalGroups knownFunctionalGroups)
CarbonChain(FattyAcid _fa, KnownFunctionalGroups knownFunctionalGroups)

Method Summary

Modifier and Type	Method	Description
FunctionalGroup	copy()
String	toString(LipidLevel level)

Methods inherited from class org.lifstools.jgoslin.domain.FunctionalGroup

addPosition, computeAndCopyElements, computeElements, getCount, getDoubleBonds, getElements, getFunctionalGroupElements, getFunctionalGroups, getFunctionalGroupsInternal, getName, getNDoubleBonds, getPosition, getRingStereo, getStereochemistry, getTotalFunctionalGroupCount, isAtomic, setAtomic, setCount, setDoubleBonds, setElements, setFunctionalGroups, setName, setPosition, setRingStereo, setStereochemistry, shiftPositions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

CarbonChain

public CarbonChain(FattyAcid _fa,
 KnownFunctionalGroups knownFunctionalGroups)

CarbonChain

public CarbonChain(FattyAcid _fa,
 int _position,
 KnownFunctionalGroups knownFunctionalGroups)

CarbonChain

public CarbonChain(FattyAcid _fa,
 int _position,
 int _count,
 KnownFunctionalGroups knownFunctionalGroups)

Method Details

copy

public FunctionalGroup copy()

Overrides:

copy in class FunctionalGroup

toString

public String toString(LipidLevel level)

Overrides:

toString in class FunctionalGroup