Package org.lifstools.jgoslin.domain

Class Headgroup

java.lang.Object

org.lifstools.jgoslin.domain.Headgroup

public final class Headgroup
extends Object

This class represents functional head groups of lipids. This is where the association to LipidClasses and LipidCategory is maintained.

Author:

Dominik Kopczynski, Nils Hoffmann

Field Summary

Fields

Modifier and Type	Field	Description
static final Map<LipidCategory,String>	CategoryString
static HashMap<Integer,String>	ClassString
static HashSet<String>	exceptionHeadgroups
static HashMap<String,LipidCategory>	StringCategory
static HashMap<String,Integer>	StringClass

Constructor Summary

Constructors

Constructor	Description
Headgroup(String _headgroup)
Headgroup(String _headgroup, ArrayList<HeadgroupDecorator> _decorators, boolean _use_headgroup)

Method Summary

Modifier and Type	Method	Description
static LipidCategory	getCategory(String _headgroup)
static String	getCategoryString(LipidCategory _lipid_category)
static int	getClass(String _headgroup)
String	getClassName()
static String	getClassString(int _lipid_class)
ArrayList<HeadgroupDecorator>	getDecorators()
ElementTable	getElements()
String	getHeadgroup()
LipidCategory	getLipidCategory()
int	getLipidClass()
String	getLipidString(LipidLevel level)
boolean	isSpException()
boolean	isUseHeadgroup()
void	setDecorators(ArrayList<HeadgroupDecorator> decorators)
void	setHeadgroup(String headgroup)
void	setLipidCategory(LipidCategory lipidCategory)
void	setLipidClass(int lipidClass)
void	setSpException(boolean spException)
void	setUseHeadgroup(boolean useHeadgroup)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

StringCategory

public static HashMap<String,LipidCategory> StringCategory

StringClass

public static HashMap<String,Integer> StringClass

ClassString

public static HashMap<Integer,String> ClassString

exceptionHeadgroups

public static HashSet<String> exceptionHeadgroups

CategoryString

public static final Map<LipidCategory,String> CategoryString

Constructor Details

Headgroup

public Headgroup(String _headgroup)

Headgroup

public Headgroup(String _headgroup,
 ArrayList<HeadgroupDecorator> _decorators,
 boolean _use_headgroup)

Method Details

getCategory

public static LipidCategory getCategory(String _headgroup)

getClass

public static int getClass(String _headgroup)

getClassString

public static String getClassString(int _lipid_class)

getClassName

public String getClassName()

getCategoryString

public static String getCategoryString(LipidCategory _lipid_category)

getLipidString

public String getLipidString(LipidLevel level)

getElements

public ElementTable getElements()

getHeadgroup

public String getHeadgroup()

setHeadgroup

public void setHeadgroup(String headgroup)

getLipidCategory

public LipidCategory getLipidCategory()

setLipidCategory

public void setLipidCategory(LipidCategory lipidCategory)

getLipidClass

public int getLipidClass()

setLipidClass

public void setLipidClass(int lipidClass)

isUseHeadgroup

public boolean isUseHeadgroup()

setUseHeadgroup

public void setUseHeadgroup(boolean useHeadgroup)

isSpException

public boolean isSpException()

setSpException

public void setSpException(boolean spException)

getDecorators

public ArrayList<HeadgroupDecorator> getDecorators()

setDecorators

public void setDecorators(ArrayList<HeadgroupDecorator> decorators)