Uses of Class
org.lifstools.jgoslin.domain.FattyAcid

Packages that use FattyAcid

Package	Description
org.lifstools.jgoslin.domain	This package contains the main common domain models for lipids.
org.lifstools.jgoslin.parser	This package contains the parser implementations for the lipid grammars.

Uses of FattyAcid in org.lifstools.jgoslin.domain

Subclasses of FattyAcid in org.lifstools.jgoslin.domain

Modifier and Type	Class	Description
final class	LipidSpeciesInfo	This class summarizes the FA parts of a lipid, independent of its head group.

Fields in org.lifstools.jgoslin.domain with type parameters of type FattyAcid

Modifier and Type	Field	Description
protected HashMap<String,FattyAcid>	LipidSpecies.fa
protected ArrayList<FattyAcid>	LipidSpecies.faList

Methods in org.lifstools.jgoslin.domain that return types with arguments of type FattyAcid

Modifier and Type	Method	Description
ArrayList<FattyAcid>	LipidSpecies.getFaList()

Methods in org.lifstools.jgoslin.domain with parameters of type FattyAcid

Modifier and Type	Method	Description
void	LipidSpeciesInfo.add(FattyAcid _fa)

Constructors in org.lifstools.jgoslin.domain with parameters of type FattyAcid

Modifier	Constructor	Description
	AcylAlkylGroup(FattyAcid _fa, int _position, int _count, boolean _alkyl, boolean _N_bond, KnownFunctionalGroups knownFunctionalGroups)
	AcylAlkylGroup(FattyAcid _fa, int _position, int _count, boolean _alkyl, KnownFunctionalGroups knownFunctionalGroups)
	AcylAlkylGroup(FattyAcid _fa, KnownFunctionalGroups knownFunctionalGroups)
	CarbonChain(FattyAcid _fa, int _position, int _count, KnownFunctionalGroups knownFunctionalGroups)
	CarbonChain(FattyAcid _fa, int _position, KnownFunctionalGroups knownFunctionalGroups)
	CarbonChain(FattyAcid _fa, KnownFunctionalGroups knownFunctionalGroups)

Constructor parameters in org.lifstools.jgoslin.domain with type arguments of type FattyAcid

Modifier	Constructor	Description
	LipidCompleteStructure(Headgroup _headgroup, Collection<FattyAcid> _fa, KnownFunctionalGroups knownFunctionalGroups)
	LipidFullStructure(Headgroup _headgroup, Collection<FattyAcid> _fa, KnownFunctionalGroups knownFunctionalGroups)
	LipidMolecularSpecies(Headgroup _headgroup, Collection<FattyAcid> _fa, KnownFunctionalGroups knownFunctionalGroups)
	LipidSnPosition(Headgroup _headgroup, Collection<FattyAcid> _fa, KnownFunctionalGroups knownFunctionalGroups)
	LipidSpecies(Headgroup _headGroup, Collection<FattyAcid> _fa, KnownFunctionalGroups knownFunctionalGroups)
	LipidStructureDefined(Headgroup _headgroup, Collection<FattyAcid> _fa, KnownFunctionalGroups knownFunctionalGroups)

Uses of FattyAcid in org.lifstools.jgoslin.parser

Fields in org.lifstools.jgoslin.parser declared as FattyAcid

Modifier and Type	Field	Description
protected FattyAcid	LipidBaseParserEventHandler.currentFa
protected FattyAcid	LipidBaseParserEventHandler.lcb

Fields in org.lifstools.jgoslin.parser with type parameters of type FattyAcid

Modifier and Type	Field	Description
protected List<FattyAcid>	LipidBaseParserEventHandler.faList