Uses of Package
org.lifstools.jgoslin.domain
Packages that use org.lifstools.jgoslin.domain
Package
Description
This package contains the main common domain models for lipids.
This package contains the parser implementations for the lipid grammars.
-
Classes in org.lifstools.jgoslin.domain used by org.lifstools.jgoslin.domainClassDescriptionAn adduct, generally, consists of a sum formula part, an adduct string, the charge and the charge sign.An exception that is thrown to indicate that preconditions have been violated.An abstraction for double bond counts and positions.Enumeration for typical chemical elements in lipids.Accounting table for chemical element frequency.A fatty acid with a specific type.A functional group of a fatty acid, it can contain nested functional groups.This class represents functional head groups of lipids.A lookup class that provides access to known functional groups defined in a file following the format of functional-groups.csv.The lipid category nomenclature follows the shorthand notation ofLookup class for lipid classes, consisting of
LipidClassMetaentries, derived from lipid-list.csv.Base exception for exceptions that relate to lipid parsing or creation of lipids.The lipid fatty acyl bond types define how the FA is connected to the head group or which variant of a particular bond type it is.Full structure level according to the 2020 update of the Liebisch shorthand nomenclature.Defines the taxonomy of lipid levels, including UNDEFINED for lipids where the level can not be inferred or does not apply.Molecular species level according to the 2020 update of the Liebisch shorthand nomenclature.Sn position level according to the 2020 update of the Liebisch shorthand nomenclature.A lipid species is the factual root of the object hierarchy.This class summarizes the FA parts of a lipid, independent of its head group.Structure defined level according to the 2020 update of the Liebisch shorthand nomenclature. -
Classes in org.lifstools.jgoslin.domain used by org.lifstools.jgoslin.parserClassDescriptionAn adduct, generally, consists of a sum formula part, an adduct string, the charge and the charge sign.A fatty acid with a specific type.This class represents functional head groups of lipids.A lookup class that provides access to known functional groups defined in a file following the format of functional-groups.csv.Base class for lipid names parsed using the different grammars.Defines the taxonomy of lipid levels, including UNDEFINED for lipids where the level can not be inferred or does not apply.A lipid species is the factual root of the object hierarchy.