Package org.lifstools.jgoslin.domain

Klasse Cycle

java.lang.Object

org.lifstools.jgoslin.domain.FunctionalGroup

org.lifstools.jgoslin.domain.Cycle

public final class Cycle
extends FunctionalGroup

A cyclic hydrocarbon chain as a functional group.

Autor:

Dominik Kopczynski, Nils Hoffmann

Feldübersicht

Von Klasse geerbte Felder org.lifstools.jgoslin.domain.FunctionalGroup

atomic, count, doubleBonds, elements, functionalGroups, knownFunctionalGroups, name, position, ringStereo, stereoBound, stereochemistry

Konstruktorübersicht

Konstruktoren

Konstruktor	Beschreibung
Cycle(int _cycle, int _start, int _end, HashMap<String,ArrayList<FunctionalGroup>> _functional_groups, KnownFunctionalGroups knownFunctionalGroups)
Cycle(int _cycle, int _start, int _end, DoubleBonds _double_bonds, HashMap<String,ArrayList<FunctionalGroup>> _functional_groups, ArrayList<Element> _bridge_chain, KnownFunctionalGroups knownFunctionalGroups)
Cycle(int _cycle, int _start, int _end, DoubleBonds _double_bonds, HashMap<String,ArrayList<FunctionalGroup>> _functional_groups, KnownFunctionalGroups knownFunctionalGroups)
Cycle(int _cycle, int _start, int _end, KnownFunctionalGroups knownFunctionalGroups)
Cycle(int _cycle, KnownFunctionalGroups knownFunctionalGroups)

Methodenübersicht

Modifizierer und Typ	Methode	Beschreibung
void	addPosition(int pos)
void	computeElements()
FunctionalGroup	copy()
ArrayList<Element>	getBridgeChain()
int	getCycle()
int	getEnd()
int	getNDoubleBonds()
int	getStart()
void	rearrangeFunctionalGroups(FunctionalGroup parent, int shift)
void	setCycle(int cycle)
void	setEnd(int end)
void	setStart(int start)
void	shiftPositions(int shift)
String	toString(LipidLevel level)

Von Klasse geerbte Methoden org.lifstools.jgoslin.domain.FunctionalGroup

computeAndCopyElements, getCount, getDoubleBonds, getElements, getFunctionalGroupElements, getFunctionalGroups, getFunctionalGroupsInternal, getName, getPosition, getRingStereo, getStereoBound, getStereochemistry, getTotalFunctionalGroupCount, isAtomic, setAtomic, setCount, setDoubleBonds, setElements, setFunctionalGroups, setName, setPosition, setRingStereo, setStereoBound, setStereochemistry, stereoInformationMissing

Von Klasse geerbte Methoden java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Konstruktordetails

Cycle

public Cycle(int _cycle,
 KnownFunctionalGroups knownFunctionalGroups)

Cycle

public Cycle(int _cycle,
 int _start,
 int _end,
 KnownFunctionalGroups knownFunctionalGroups)

Cycle

public Cycle(int _cycle,
 int _start,
 int _end,
 HashMap<String,ArrayList<FunctionalGroup>> _functional_groups,
 KnownFunctionalGroups knownFunctionalGroups)

Cycle

public Cycle(int _cycle,
 int _start,
 int _end,
 DoubleBonds _double_bonds,
 HashMap<String,ArrayList<FunctionalGroup>> _functional_groups,
 KnownFunctionalGroups knownFunctionalGroups)

Cycle

public Cycle(int _cycle,
 int _start,
 int _end,
 DoubleBonds _double_bonds,
 HashMap<String,ArrayList<FunctionalGroup>> _functional_groups,
 ArrayList<Element> _bridge_chain,
 KnownFunctionalGroups knownFunctionalGroups)

Methodendetails

copy

public FunctionalGroup copy()

Setzt außer Kraft:

copy in Klasse FunctionalGroup

getCycle

public int getCycle()

setCycle

public void setCycle(int cycle)

getStart

public int getStart()

setStart

public void setStart(int start)

getEnd

public int getEnd()

setEnd

public void setEnd(int end)

getBridgeChain

public ArrayList<Element> getBridgeChain()

getNDoubleBonds

public int getNDoubleBonds()
                    throws ConstraintViolationException

Setzt außer Kraft:

getNDoubleBonds in Klasse FunctionalGroup

Löst aus:

ConstraintViolationException

addPosition

public void addPosition(int pos)

Setzt außer Kraft:

addPosition in Klasse FunctionalGroup

rearrangeFunctionalGroups

public void rearrangeFunctionalGroups(FunctionalGroup parent,
 int shift)

shiftPositions

public void shiftPositions(int shift)

Setzt außer Kraft:

shiftPositions in Klasse FunctionalGroup

computeElements

public void computeElements()

Setzt außer Kraft:

computeElements in Klasse FunctionalGroup

toString

public String toString(LipidLevel level)

Setzt außer Kraft:

toString in Klasse FunctionalGroup