Package org.lifstools.jgoslin.domain

Klasse LipidSpeciesInfo

java.lang.Object

org.lifstools.jgoslin.domain.FunctionalGroup

org.lifstools.jgoslin.domain.FattyAcid

org.lifstools.jgoslin.domain.LipidSpeciesInfo

public final class LipidSpeciesInfo
extends FattyAcid

This class summarizes the FA parts of a lipid, independent of its head group. Thus, it accounts the total number of carbon atoms, double bonds, the number of hydroxylations, the overall FA-headgroup bond type, e.g. ETHER PLASMANYL / PLASMENYL, if any of a lipid's FA chains has such a bond type, or ESTER, AMINE, LCB or UNDEFINED for other cases.

Autor:

Dominik Kopczynski, Nils Hoffmann

Feldübersicht

Felder

Modifizierer und Typ	Feld	Beschreibung
static final String[]	ETHER_PREFIX
LipidFaBondType	extendedClass
int	lipidClass
int	numEthers
int	numSpecifiedFa
int	possFa
int	totalFa

Von Klasse geerbte Felder org.lifstools.jgoslin.domain.FattyAcid

fgExceptions, LCB_STATES, lipidFaBondType, numCarbon, unresolvedHiddenFa

Von Klasse geerbte Felder org.lifstools.jgoslin.domain.FunctionalGroup

atomic, count, doubleBonds, elements, functionalGroups, knownFunctionalGroups, name, position, ringStereo, stereoBound, stereochemistry

Konstruktorübersicht

Konstruktoren

Konstruktor	Beschreibung
LipidSpeciesInfo(int _lipid_class, KnownFunctionalGroups knownFunctionalGroups)

Methodenübersicht

Modifizierer und Typ	Methode	Beschreibung
void	add(FattyAcid _fa)
LipidSpeciesInfo	copy()
ElementTable	getElements()
LipidFaBondType	getExtendedClass()
LipidLevel	getLevel()
int	getLipidClass()
int	getNumEthers()
int	getNumSpecifiedFa()
int	getTotalFa()
void	setExtendedClass(LipidFaBondType extendedClass)
void	setLevel(LipidLevel level)
void	setLipidClass(int lipidClass)
void	setNumEthers(int numEthers)
void	setNumSpecifiedFa(int numSpecifiedFa)
void	setTotalFa(int totalFa)
String	toString()

Von Klasse geerbte Methoden org.lifstools.jgoslin.domain.FattyAcid

computeElements, getFunctionalGroupElements, getLipidFaBondType, getNDoubleBonds, getNumCarbon, getPrefix, lipidFaBondTypePrefix, setLipidFaBondType, setNumCarbon, setType, toString

Von Klasse geerbte Methoden org.lifstools.jgoslin.domain.FunctionalGroup

addPosition, computeAndCopyElements, getCount, getDoubleBonds, getFunctionalGroups, getFunctionalGroupsInternal, getName, getPosition, getRingStereo, getStereoBound, getStereochemistry, getTotalFunctionalGroupCount, isAtomic, setAtomic, setCount, setDoubleBonds, setElements, setFunctionalGroups, setName, setPosition, setRingStereo, setStereoBound, setStereochemistry, shiftPositions, stereoInformationMissing

Von Klasse geerbte Methoden java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Felddetails

numEthers

public int numEthers

numSpecifiedFa

public int numSpecifiedFa

possFa

public int possFa

totalFa

public int totalFa

extendedClass

public LipidFaBondType extendedClass

ETHER_PREFIX

public static final String[] ETHER_PREFIX

lipidClass

public int lipidClass

Konstruktordetails

LipidSpeciesInfo

public LipidSpeciesInfo(int _lipid_class,
 KnownFunctionalGroups knownFunctionalGroups)

Methodendetails

copy

public LipidSpeciesInfo copy()

Setzt außer Kraft:

copy in Klasse FattyAcid

getElements

public ElementTable getElements()

Setzt außer Kraft:

getElements in Klasse FunctionalGroup

add

public void add(FattyAcid _fa)

toString

public String toString()

Setzt außer Kraft:

toString in Klasse Object

getLevel

public LipidLevel getLevel()

setLevel

public void setLevel(LipidLevel level)

getNumEthers

public int getNumEthers()

setNumEthers

public void setNumEthers(int numEthers)

getNumSpecifiedFa

public int getNumSpecifiedFa()

setNumSpecifiedFa

public void setNumSpecifiedFa(int numSpecifiedFa)

getTotalFa

public int getTotalFa()

setTotalFa

public void setTotalFa(int totalFa)

getExtendedClass

public LipidFaBondType getExtendedClass()

setExtendedClass

public void setExtendedClass(LipidFaBondType extendedClass)

getLipidClass

public int getLipidClass()

setLipidClass

public void setLipidClass(int lipidClass)