Verwendungen von Klasse
org.lifstools.jgoslin.domain.FunctionalGroup

Packages, die FunctionalGroup verwenden

Package	Beschreibung
org.lifstools.jgoslin.domain	This package contains the main common domain models for lipids.
org.lifstools.jgoslin.parser	This package contains the parser implementations for the lipid grammars.

Verwendungen von FunctionalGroup in org.lifstools.jgoslin.domain

Unterklassen von FunctionalGroup in org.lifstools.jgoslin.domain

Modifizierer und Typ	Klasse	Beschreibung
final class	AcylAlkylGroup	An acyl alkyl group as a functional group.
final class	CarbonChain	A linear hydrocarbon chain as a functional group.
final class	Cycle	A cyclic hydrocarbon chain as a functional group.
class	FattyAcid	A fatty acid with a specific type.
final class	HeadgroupDecorator
final class	LipidSpeciesInfo	This class summarizes the FA parts of a lipid, independent of its head group.

Felder in org.lifstools.jgoslin.domain mit Typparametern vom Typ FunctionalGroup

Modifizierer und Typ	Feld	Beschreibung
protected HashMap<String,ArrayList<FunctionalGroup>>	FunctionalGroup.functionalGroups

Methoden in org.lifstools.jgoslin.domain, die FunctionalGroup zurückgeben

Modifizierer und Typ	Methode	Beschreibung
FunctionalGroup	AcylAlkylGroup.copy()
FunctionalGroup	CarbonChain.copy()
FunctionalGroup	Cycle.copy()
FunctionalGroup	FattyAcid.copy()
FunctionalGroup	FunctionalGroup.copy()
FunctionalGroup	HeadgroupDecorator.copy()
FunctionalGroup	KnownFunctionalGroups.get(String s)

Methoden in org.lifstools.jgoslin.domain, die Typen mit Argumenten vom Typ FunctionalGroup zurückgeben

Modifizierer und Typ	Methode	Beschreibung
Map<String,ArrayList<FunctionalGroup>>	FunctionalGroup.getFunctionalGroups()	Returns a copy of the internally used functional groups map, with the virtual [X] group for regular LCBs removed.
Map<String,ArrayList<FunctionalGroup>>	FunctionalGroup.getFunctionalGroupsInternal()	Returns the internal representation of the functional groups, including the virtual [X] group for regular LCBs.

Methoden in org.lifstools.jgoslin.domain mit Parametern vom Typ FunctionalGroup

Modifizierer und Typ	Methode	Beschreibung
void	Cycle.rearrangeFunctionalGroups(FunctionalGroup parent, int shift)

Methodenparameter in org.lifstools.jgoslin.domain mit Typargumenten vom Typ FunctionalGroup

Modifizierer und Typ	Methode	Beschreibung
void	FunctionalGroup.setFunctionalGroups(HashMap<String,ArrayList<FunctionalGroup>> functionalGroups)	Set the internal functional groups.

Konstruktorparameter in org.lifstools.jgoslin.domain mit Typargumenten vom Typ FunctionalGroup

Modifizierer	Konstruktor	Beschreibung
	Cycle(int _cycle, int _start, int _end, HashMap<String,ArrayList<FunctionalGroup>> _functional_groups, KnownFunctionalGroups knownFunctionalGroups)
	Cycle(int _cycle, int _start, int _end, DoubleBonds _double_bonds, HashMap<String,ArrayList<FunctionalGroup>> _functional_groups, ArrayList<Element> _bridge_chain, KnownFunctionalGroups knownFunctionalGroups)
	Cycle(int _cycle, int _start, int _end, DoubleBonds _double_bonds, HashMap<String,ArrayList<FunctionalGroup>> _functional_groups, KnownFunctionalGroups knownFunctionalGroups)
	FattyAcid(String _name, int _num_carbon, DoubleBonds _double_bonds, HashMap<String,ArrayList<FunctionalGroup>> _functional_groups, KnownFunctionalGroups knownFunctionalGroups)
	FattyAcid(String _name, int _num_carbon, DoubleBonds _double_bonds, HashMap<String,ArrayList<FunctionalGroup>> _functional_groups, LipidFaBondType _lipid_FA_bond_type, int _position, KnownFunctionalGroups knownFunctionalGroups)
	FattyAcid(String _name, int _num_carbon, DoubleBonds _double_bonds, HashMap<String,ArrayList<FunctionalGroup>> _functional_groups, LipidFaBondType _lipid_FA_bond_type, KnownFunctionalGroups knownFunctionalGroups)
	FunctionalGroup(String _name, int _position, int _count, DoubleBonds _double_bonds, boolean _is_atomic, String _stereochemistry, boolean _stereoBound, ElementTable _elements, HashMap<String,ArrayList<FunctionalGroup>> _functional_groups, KnownFunctionalGroups knownFunctionalGroups)

Verwendungen von FunctionalGroup in org.lifstools.jgoslin.parser

Methoden in org.lifstools.jgoslin.parser mit Parametern vom Typ FunctionalGroup

Modifizierer und Typ	Methode	Beschreibung
protected boolean	LipidBaseParserEventHandler.check_full_structure(FunctionalGroup obj)