Package org.lifstools.jgoslin.parser

Klasse LipidMapsParser

java.lang.Object

org.lifstools.jgoslin.parser.Parser<LipidAdduct>

org.lifstools.jgoslin.parser.LipidMapsParser

public class LipidMapsParser
extends Parser<LipidAdduct>

Parser implementation for the LIPID MAPS lipid shorthand nomenclature.

Autor:

Dominik Kopczynski, Nils Hoffmann

Verschachtelte Klassen - Übersicht

Von Klasse geerbte verschachtelte Klassen/Schnittstellen org.lifstools.jgoslin.parser.Parser

Parser.DPNode, Parser.ParsingErrors

Feldübersicht

Von Klasse geerbte Felder org.lifstools.jgoslin.parser.Parser

avgPair, DEFAULT_QUOTE, EOF_RULE, EOF_RULE_NAME, EOF_SIGN, grammarName, MASK, nextFreeRuleIndex, NTtoNT, NTtoRule, originalTtoNT, quote, rightPair, RULE_ASSIGNMENT, RULE_SEPARATOR, RULE_TERMINAL, ruleToNT, SHIFT, START_RULE, substitution, TtoNT, usedEof

Konstruktorübersicht

Konstruktoren

Konstruktor	Beschreibung
LipidMapsParser()	Create a new instance of a LipidMapsParser with default grammar DEFAULT_GRAMMAR and default quote StringFunctions.DEFAULT_QUOTE and default KnownFunctionalGroups.
LipidMapsParser(KnownFunctionalGroups knownFunctionalGroups)	Create a new instance of a LipidMapsParser with default grammar DEFAULT_GRAMMAR and default quote StringFunctions.DEFAULT_QUOTE.
LipidMapsParser(KnownFunctionalGroups knownFunctionalGroups, String grammarContent, char quote)	Create a new instance of a LipidMapsParser.

Methodenübersicht

Modifizierer und Typ	Methode	Beschreibung
LipidMapsParserEventHandler	newEventHandler()

Von Klasse geerbte Methoden org.lifstools.jgoslin.parser.Parser

add_terminal, collect_backwards, collect_backwards, collect_one_backwards, compute_rule_key, de_escape, extract_text_based_rules, fill_tree, get_next_free_rule_index, is_terminal, parse, parse, parse_regular, raise_events, readGrammar, top_nodes

Von Klasse geerbte Methoden java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Konstruktordetails

LipidMapsParser

public LipidMapsParser(KnownFunctionalGroups knownFunctionalGroups,
 String grammarContent,
 char quote)

Create a new instance of a LipidMapsParser.

Parameter:

knownFunctionalGroups - the known functional groups

grammarContent - the grammar text content

quote - the quotation character used in the grammar

LipidMapsParser

public LipidMapsParser(KnownFunctionalGroups knownFunctionalGroups)

Create a new instance of a LipidMapsParser with default grammar DEFAULT_GRAMMAR and default quote StringFunctions.DEFAULT_QUOTE.

Parameter:

knownFunctionalGroups - the known functional groups

LipidMapsParser

public LipidMapsParser()

Create a new instance of a LipidMapsParser with default grammar DEFAULT_GRAMMAR and default quote StringFunctions.DEFAULT_QUOTE and default KnownFunctionalGroups.

Methodendetails

newEventHandler

public LipidMapsParserEventHandler newEventHandler()

Angegeben von:

newEventHandler in Klasse Parser<LipidAdduct>