org.molgenis.controller
Class SampleController

java.lang.Object
  org.molgenis.controller.SampleController

@Lazy
@Controller
@RequestMapping(value="/api/v1/sample")
public class SampleController
extends Object

Constructor Summary

SampleController()

Method Summary

org.springframework.http.ResponseEntity<org.molgenis.controller.SampleController.SampleResponse>	createSample(org.molgenis.controller.SampleController.SampleRequest sampleRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.SampleController.SampleResponse>	createSampleFromForm(org.molgenis.controller.SampleController.SampleRequest sampleRequest)
void	deleteSample(Integer id)
void	deleteSamplePost(Integer id)
void	handleDatabaseAccessException(DatabaseAccessException e)
void	handleEntityNotFoundException(EntityNotFoundException e)
org.molgenis.controller.SampleController.SampleResponse	retrieveSample(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse>	retrieveSampleCollection(EntityCollectionRequest sampleCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse>	retrieveSampleCollectionJson(EntityCollectionRequest sampleCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse>	retrieveSampleCollectionJsonPost(EntityCollectionRequest sampleCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse>	retrieveSampleCollectionPost(EntityCollectionRequest sampleCollectionRequest, String... expandFields)
org.molgenis.controller.SampleController.SampleResponse	retrieveSampleJson(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse>	retrieveSampleMrefSampleInPool(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse>	retrieveSampleMrefSampleInPoolJson(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
String	retrieveSampleXrefCapturingKit(Integer id, String... expandFields)
String	retrieveSampleXrefCapturingKitJson(Integer id, String... expandFields)
String	retrieveSampleXrefProjectId(Integer id, String... expandFields)
String	retrieveSampleXrefProjectIdJson(Integer id, String... expandFields)
String	retrieveSampleXrefSampleBarcode(Integer id, String... expandFields)
String	retrieveSampleXrefSampleBarcodeJson(Integer id, String... expandFields)
void	updateSample(Integer id, org.molgenis.controller.SampleController.SampleRequest sampleRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.SampleController.SampleResponse>	updateSampleFromForm(Integer id, String _method, org.molgenis.controller.SampleController.SampleRequest sampleRequest)
void	updateSampleFromFormPost(Integer id, org.molgenis.controller.SampleController.SampleRequest sampleRequest)
void	updateSamplePost(Integer id, org.molgenis.controller.SampleController.SampleRequest sampleRequest)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SampleController

public SampleController()

Method Detail

createSample

@RequestMapping(method=POST)
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SampleController.SampleResponse> createSample(@RequestBody
                                                                                                                                                 org.molgenis.controller.SampleController.SampleRequest sampleRequest)
                                                                                                              throws DatabaseException

Throws:

DatabaseException

createSampleFromForm

@RequestMapping(method=POST,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SampleController.SampleResponse> createSampleFromForm(@ModelAttribute
                                                                                                                                                         org.molgenis.controller.SampleController.SampleRequest sampleRequest)
                                                                                                                      throws DatabaseException

Throws:

DatabaseException

retrieveSample

@RequestMapping(value="/{id}",
                method=GET)
@ResponseBody
public org.molgenis.controller.SampleController.SampleResponse retrieveSample(@PathVariable
                                                                                                          Integer id,
                                                                                                          @RequestParam(value="expand",required=false)
                                                                                                          String... expandFields)
                                                                       throws DatabaseException

Throws:

DatabaseException

retrieveSampleJson

@RequestMapping(value="/{id}",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public org.molgenis.controller.SampleController.SampleResponse retrieveSampleJson(@PathVariable
                                                                                                              Integer id,
                                                                                                              @RequestParam(value="expand",required=false)
                                                                                                              String... expandFields)
                                                                           throws DatabaseException

Throws:

DatabaseException

retrieveSampleXrefProjectId

@RequestMapping(value="/{id}/projectId",
                method=GET)
public String retrieveSampleXrefProjectId(@PathVariable
                                                         Integer id,
                                                         @RequestParam(value="expand",required=false)
                                                         String... expandFields)
                                   throws DatabaseException

Throws:

DatabaseException

retrieveSampleXrefProjectIdJson

@RequestMapping(value="/{id}/projectId",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveSampleXrefProjectIdJson(@PathVariable
                                                             Integer id,
                                                             @RequestParam(value="expand",required=false)
                                                             String... expandFields)
                                       throws DatabaseException

Throws:

DatabaseException

retrieveSampleXrefCapturingKit

@RequestMapping(value="/{id}/capturingKit",
                method=GET)
public String retrieveSampleXrefCapturingKit(@PathVariable
                                                            Integer id,
                                                            @RequestParam(value="expand",required=false)
                                                            String... expandFields)
                                      throws DatabaseException

Throws:

DatabaseException

retrieveSampleXrefCapturingKitJson

@RequestMapping(value="/{id}/capturingKit",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveSampleXrefCapturingKitJson(@PathVariable
                                                                Integer id,
                                                                @RequestParam(value="expand",required=false)
                                                                String... expandFields)
                                          throws DatabaseException

Throws:

DatabaseException

retrieveSampleXrefSampleBarcode

@RequestMapping(value="/{id}/sampleBarcode",
                method=GET)
public String retrieveSampleXrefSampleBarcode(@PathVariable
                                                             Integer id,
                                                             @RequestParam(value="expand",required=false)
                                                             String... expandFields)
                                       throws DatabaseException

Throws:

DatabaseException

retrieveSampleXrefSampleBarcodeJson

@RequestMapping(value="/{id}/sampleBarcode",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveSampleXrefSampleBarcodeJson(@PathVariable
                                                                 Integer id,
                                                                 @RequestParam(value="expand",required=false)
                                                                 String... expandFields)
                                           throws DatabaseException

Throws:

DatabaseException

retrieveSampleMrefSampleInPool

@RequestMapping(value="/{id}/sampleInPool",
                method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse> retrieveSampleMrefSampleInPool(@PathVariable
                                                                                                                                                    Integer id,
                                                                                                                                                    EntityCollectionRequest entityCollectionRequest,
                                                                                                                                                    @RequestParam(value="expand",required=false)
                                                                                                                                                    String... expandFields)
                                                                                                                 throws DatabaseException

Throws:

DatabaseException

retrieveSampleMrefSampleInPoolJson

@RequestMapping(value="/{id}/sampleInPool",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse> retrieveSampleMrefSampleInPoolJson(@PathVariable
                                                                                                                                                        Integer id,
                                                                                                                                                        EntityCollectionRequest entityCollectionRequest,
                                                                                                                                                        @RequestParam(value="expand",required=false)
                                                                                                                                                        String... expandFields)
                                                                                                                     throws DatabaseException

Throws:

DatabaseException

updateSample

@RequestMapping(value="/{id}",
                method=PUT)
@ResponseStatus(value=OK)
public void updateSample(@PathVariable
                                                       Integer id,
                                                       @RequestBody
                                                       org.molgenis.controller.SampleController.SampleRequest sampleRequest)
                  throws DatabaseException

Throws:

DatabaseException

updateSampleFromForm

@RequestMapping(value="/{id}",
                method=PUT,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SampleController.SampleResponse> updateSampleFromForm(@PathVariable
                                                                                                                                                         Integer id,
                                                                                                                                                         @PathVariable
                                                                                                                                                         String _method,
                                                                                                                                                         @ModelAttribute
                                                                                                                                                         org.molgenis.controller.SampleController.SampleRequest sampleRequest)
                                                                                                                      throws DatabaseException

Throws:

DatabaseException

updateSamplePost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT")
@ResponseStatus(value=NO_CONTENT)
public void updateSamplePost(@PathVariable
                                                           Integer id,
                                                           @RequestBody
                                                           org.molgenis.controller.SampleController.SampleRequest sampleRequest)
                      throws DatabaseException

Throws:

DatabaseException

updateSampleFromFormPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT",
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseStatus(value=NO_CONTENT)
public void updateSampleFromFormPost(@PathVariable
                                                                   Integer id,
                                                                   @ModelAttribute
                                                                   org.molgenis.controller.SampleController.SampleRequest sampleRequest)
                              throws DatabaseException

Throws:

DatabaseException

deleteSample

@RequestMapping(value="/{id}",
                method=DELETE)
@ResponseStatus(value=NO_CONTENT)
public void deleteSample(@PathVariable
                                                       Integer id)
                  throws DatabaseException

Throws:

DatabaseException

deleteSamplePost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=DELETE")
@ResponseStatus(value=NO_CONTENT)
public void deleteSamplePost(@PathVariable
                                                           Integer id)
                      throws DatabaseException

Throws:

DatabaseException

retrieveSampleCollection

@RequestMapping(method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse> retrieveSampleCollection(EntityCollectionRequest sampleCollectionRequest,
                                                                                                                                              @RequestParam(value="expand",required=false)
                                                                                                                                              String... expandFields)
                                                                                                           throws DatabaseException

Throws:

DatabaseException

retrieveSampleCollectionJson

@RequestMapping(method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse> retrieveSampleCollectionJson(EntityCollectionRequest sampleCollectionRequest,
                                                                                                                                                  @RequestParam(value="expand",required=false)
                                                                                                                                                  String... expandFields)
                                                                                                               throws DatabaseException

Throws:

DatabaseException

retrieveSampleCollectionPost

@RequestMapping(method=POST,
                params="_method=GET")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse> retrieveSampleCollectionPost(@RequestBody
                                                                                                                                                  EntityCollectionRequest sampleCollectionRequest,
                                                                                                                                                  @RequestParam(value="expand",required=false)
                                                                                                                                                  String... expandFields)
                                                                                                               throws DatabaseException

Throws:

DatabaseException

retrieveSampleCollectionJsonPost

@RequestMapping(method=POST,
                params={"_method=GET","format=json"},
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse> retrieveSampleCollectionJsonPost(@RequestBody
                                                                                                                                                      EntityCollectionRequest sampleCollectionRequest,
                                                                                                                                                      @RequestParam(value="expand",required=false)
                                                                                                                                                      String... expandFields)
                                                                                                                   throws DatabaseException

Throws:

DatabaseException

handleEntityNotFoundException

@ExceptionHandler(value=org.molgenis.framework.db.EntityNotFoundException.class)
@ResponseStatus(value=NOT_FOUND)
public void handleEntityNotFoundException(EntityNotFoundException e)

handleDatabaseAccessException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseAccessException.class)
@ResponseStatus(value=UNAUTHORIZED)
public void handleDatabaseAccessException(DatabaseAccessException e)