org.molgenis.controller
Class SpeciesController

java.lang.Object
  org.molgenis.controller.SpeciesController

@Lazy
@Controller
@RequestMapping(value="/api/v1/species")
public class SpeciesController
extends Object

Constructor Summary

SpeciesController()

Method Summary

org.springframework.http.ResponseEntity<org.molgenis.controller.SpeciesController.SpeciesResponse>	createSpecies(org.molgenis.controller.SpeciesController.SpeciesRequest speciesRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.SpeciesController.SpeciesResponse>	createSpeciesFromForm(org.molgenis.controller.SpeciesController.SpeciesRequest speciesRequest)
void	deleteSpecies(Integer id)
void	deleteSpeciesPost(Integer id)
void	handleDatabaseAccessException(DatabaseAccessException e)
void	handleEntityNotFoundException(EntityNotFoundException e)
org.molgenis.controller.SpeciesController.SpeciesResponse	retrieveSpecies(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SpeciesController.SpeciesResponse>	retrieveSpeciesCollection(EntityCollectionRequest speciesCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SpeciesController.SpeciesResponse>	retrieveSpeciesCollectionJson(EntityCollectionRequest speciesCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SpeciesController.SpeciesResponse>	retrieveSpeciesCollectionJsonPost(EntityCollectionRequest speciesCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SpeciesController.SpeciesResponse>	retrieveSpeciesCollectionPost(EntityCollectionRequest speciesCollectionRequest, String... expandFields)
org.molgenis.controller.SpeciesController.SpeciesResponse	retrieveSpeciesJson(Integer id, String... expandFields)
String	retrieveSpeciesXrefOntology(Integer id, String... expandFields)
String	retrieveSpeciesXrefOntologyJson(Integer id, String... expandFields)
void	updateSpecies(Integer id, org.molgenis.controller.SpeciesController.SpeciesRequest speciesRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.SpeciesController.SpeciesResponse>	updateSpeciesFromForm(Integer id, String _method, org.molgenis.controller.SpeciesController.SpeciesRequest speciesRequest)
void	updateSpeciesFromFormPost(Integer id, org.molgenis.controller.SpeciesController.SpeciesRequest speciesRequest)
void	updateSpeciesPost(Integer id, org.molgenis.controller.SpeciesController.SpeciesRequest speciesRequest)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SpeciesController

public SpeciesController()

Method Detail

createSpecies

@RequestMapping(method=POST)
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SpeciesController.SpeciesResponse> createSpecies(@RequestBody
                                                                                                                                                    org.molgenis.controller.SpeciesController.SpeciesRequest speciesRequest)
                                                                                                                 throws DatabaseException

Throws:

DatabaseException

createSpeciesFromForm

@RequestMapping(method=POST,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SpeciesController.SpeciesResponse> createSpeciesFromForm(@ModelAttribute
                                                                                                                                                            org.molgenis.controller.SpeciesController.SpeciesRequest speciesRequest)
                                                                                                                         throws DatabaseException

Throws:

DatabaseException

retrieveSpecies

@RequestMapping(value="/{id}",
                method=GET)
@ResponseBody
public org.molgenis.controller.SpeciesController.SpeciesResponse retrieveSpecies(@PathVariable
                                                                                                             Integer id,
                                                                                                             @RequestParam(value="expand",required=false)
                                                                                                             String... expandFields)
                                                                          throws DatabaseException

Throws:

DatabaseException

retrieveSpeciesJson

@RequestMapping(value="/{id}",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public org.molgenis.controller.SpeciesController.SpeciesResponse retrieveSpeciesJson(@PathVariable
                                                                                                                 Integer id,
                                                                                                                 @RequestParam(value="expand",required=false)
                                                                                                                 String... expandFields)
                                                                              throws DatabaseException

Throws:

DatabaseException

retrieveSpeciesXrefOntology

@RequestMapping(value="/{id}/ontology",
                method=GET)
public String retrieveSpeciesXrefOntology(@PathVariable
                                                         Integer id,
                                                         @RequestParam(value="expand",required=false)
                                                         String... expandFields)
                                   throws DatabaseException

Throws:

DatabaseException

retrieveSpeciesXrefOntologyJson

@RequestMapping(value="/{id}/ontology",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveSpeciesXrefOntologyJson(@PathVariable
                                                             Integer id,
                                                             @RequestParam(value="expand",required=false)
                                                             String... expandFields)
                                       throws DatabaseException

Throws:

DatabaseException

updateSpecies

@RequestMapping(value="/{id}",
                method=PUT)
@ResponseStatus(value=OK)
public void updateSpecies(@PathVariable
                                                        Integer id,
                                                        @RequestBody
                                                        org.molgenis.controller.SpeciesController.SpeciesRequest speciesRequest)
                   throws DatabaseException

Throws:

DatabaseException

updateSpeciesFromForm

@RequestMapping(value="/{id}",
                method=PUT,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SpeciesController.SpeciesResponse> updateSpeciesFromForm(@PathVariable
                                                                                                                                                            Integer id,
                                                                                                                                                            @PathVariable
                                                                                                                                                            String _method,
                                                                                                                                                            @ModelAttribute
                                                                                                                                                            org.molgenis.controller.SpeciesController.SpeciesRequest speciesRequest)
                                                                                                                         throws DatabaseException

Throws:

DatabaseException

updateSpeciesPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT")
@ResponseStatus(value=NO_CONTENT)
public void updateSpeciesPost(@PathVariable
                                                            Integer id,
                                                            @RequestBody
                                                            org.molgenis.controller.SpeciesController.SpeciesRequest speciesRequest)
                       throws DatabaseException

Throws:

DatabaseException

updateSpeciesFromFormPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT",
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseStatus(value=NO_CONTENT)
public void updateSpeciesFromFormPost(@PathVariable
                                                                    Integer id,
                                                                    @ModelAttribute
                                                                    org.molgenis.controller.SpeciesController.SpeciesRequest speciesRequest)
                               throws DatabaseException

Throws:

DatabaseException

deleteSpecies

@RequestMapping(value="/{id}",
                method=DELETE)
@ResponseStatus(value=NO_CONTENT)
public void deleteSpecies(@PathVariable
                                                        Integer id)
                   throws DatabaseException

Throws:

DatabaseException

deleteSpeciesPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=DELETE")
@ResponseStatus(value=NO_CONTENT)
public void deleteSpeciesPost(@PathVariable
                                                            Integer id)
                       throws DatabaseException

Throws:

DatabaseException

retrieveSpeciesCollection

@RequestMapping(method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SpeciesController.SpeciesResponse> retrieveSpeciesCollection(EntityCollectionRequest speciesCollectionRequest,
                                                                                                                                                 @RequestParam(value="expand",required=false)
                                                                                                                                                 String... expandFields)
                                                                                                              throws DatabaseException

Throws:

DatabaseException

retrieveSpeciesCollectionJson

@RequestMapping(method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SpeciesController.SpeciesResponse> retrieveSpeciesCollectionJson(EntityCollectionRequest speciesCollectionRequest,
                                                                                                                                                     @RequestParam(value="expand",required=false)
                                                                                                                                                     String... expandFields)
                                                                                                                  throws DatabaseException

Throws:

DatabaseException

retrieveSpeciesCollectionPost

@RequestMapping(method=POST,
                params="_method=GET")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SpeciesController.SpeciesResponse> retrieveSpeciesCollectionPost(@RequestBody
                                                                                                                                                     EntityCollectionRequest speciesCollectionRequest,
                                                                                                                                                     @RequestParam(value="expand",required=false)
                                                                                                                                                     String... expandFields)
                                                                                                                  throws DatabaseException

Throws:

DatabaseException

retrieveSpeciesCollectionJsonPost

@RequestMapping(method=POST,
                params={"_method=GET","format=json"},
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SpeciesController.SpeciesResponse> retrieveSpeciesCollectionJsonPost(@RequestBody
                                                                                                                                                         EntityCollectionRequest speciesCollectionRequest,
                                                                                                                                                         @RequestParam(value="expand",required=false)
                                                                                                                                                         String... expandFields)
                                                                                                                      throws DatabaseException

Throws:

DatabaseException

handleEntityNotFoundException

@ExceptionHandler(value=org.molgenis.framework.db.EntityNotFoundException.class)
@ResponseStatus(value=NOT_FOUND)
public void handleEntityNotFoundException(EntityNotFoundException e)

handleDatabaseAccessException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseAccessException.class)
@ResponseStatus(value=UNAUTHORIZED)
public void handleDatabaseAccessException(DatabaseAccessException e)