org.molgenis.omx.ngs
Class SampleBarcode

java.lang.Object
  org.molgenis.util.AbstractEntity
      org.molgenis.omx.ngs.SampleBarcode

All Implemented Interfaces:

Serializable, Autoid, Entity

@Entity
public class SampleBarcode
extends AbstractEntity
implements Autoid

SampleBarcode: .

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

static String	ID
static String	SAMPLEBARCODENAME
static String	SAMPLEBARCODENR
static String	SAMPLEBARCODESEQUENCE
static String	SAMPLEBARCODETYPE
static String	SAMPLEBARCODETYPE_SAMPLEBARCODETYPENAME

Constructor Summary

SampleBarcode()

SampleBarcode(SampleBarcode copyMe)
copy constructor

Method Summary

SampleBarcode	create(Tuple tuple)
boolean	equals(Object obj)
static List<? extends SampleBarcode>	find(Database db, QueryRule... rules) Shorthand for db.find(SampleBarcode.class, org.molgenis.framework.db.QueryRule ...
static SampleBarcode	findById(Database db, Integer id)
static SampleBarcode	findBySampleBarcodeName(Database db, String sampleBarcodeName)
static SampleBarcode	findBySampleBarcodeTypeSampleBarcodeNrSampleBarcodeSequence(Database db, Integer sampleBarcodeType, String sampleBarcodeNr, String sampleBarcodeSequence)
Object	get(String name) Generic getter.
Vector<String>	getFields()
Vector<String>	getFields(boolean skipAutoIds) Get the names of all public properties of SampleBarcode.
String	getFields(String sep) Deprecated.
Integer	getId() Get the automatically generated internal id, only for internal use..
String	getIdField()
Object	getIdValue()
List<String>	getLabelFields()
String	getSampleBarcodeName() Get the A concatenated value of Type, Nr and Sequence.
String	getSampleBarcodeName(Database db) Deprecated.
String	getSampleBarcodeNr() Get the The identifier of a barcode given by the supplier.
String	getSampleBarcodeNr(Database db) Deprecated.
String	getSampleBarcodeSequence() Get the The nucleotide sequence which forms the barcode.
String	getSampleBarcodeSequence(Database db) Deprecated.
Integer	getSampleBarcodeType_Id()
String	getSampleBarcodeType_SampleBarcodeTypeName() Get a pretty label SampleBarcodeTypeName for cross reference SampleBarcodeType to SampleBarcodeType.Id.
SampleBarcodeType	getSampleBarcodeType() Get the Type.
SampleBarcodeType	getSampleBarcodeType(Database db) Deprecated.
String	getValues(String sep) Deprecated.
String	getXrefIdFieldName(String fieldName)
int	hashCode()
static Query<? extends SampleBarcode>	query(Database db) Shorthand for db.query(SampleBarcode.class).
void	set(Tuple tuple, boolean strict)
void	setId(Integer id) Set the automatically generated internal id, only for internal use..
void	setSampleBarcodeName(String sampleBarcodeName) Set the A concatenated value of Type, Nr and Sequence.
void	setSampleBarcodeNr(String sampleBarcodeNr) Set the The identifier of a barcode given by the supplier.
void	setSampleBarcodeSequence(String sampleBarcodeSequence) Set the The nucleotide sequence which forms the barcode.
void	setSampleBarcodeType_Id(Integer sampleBarcodeType_id) Set foreign key for field sampleBarcodeType.
void	setSampleBarcodeType_SampleBarcodeTypeName(String sampleBarcodeType_SampleBarcodeTypeName) Set a pretty label for cross reference SampleBarcodeType to SampleBarcodeType.Id.
void	setSampleBarcodeType(Integer sampleBarcodeType_id)
void	setSampleBarcodeType(SampleBarcodeType sampleBarcodeType) Set the Type.
String	toString()
String	toString(boolean verbose)
void	validate()

Methods inherited from class org.molgenis.util.AbstractEntity

get__Type, get__TypeLabel, get__TypeOptions, getLabelValue, getValues, isObjectRepresentation, isReadonly, set__Type, set, set, setReadonly, setValuesFromString, string2date

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.util.Entity

getLabelValue, getValues, isReadonly, set, set, setReadonly

Field Detail

ID

public static final String ID

See Also:

Constant Field Values

SAMPLEBARCODENR

public static final String SAMPLEBARCODENR

See Also:

Constant Field Values

SAMPLEBARCODESEQUENCE

public static final String SAMPLEBARCODESEQUENCE

See Also:

Constant Field Values

SAMPLEBARCODETYPE

public static final String SAMPLEBARCODETYPE

See Also:

Constant Field Values

SAMPLEBARCODETYPE_SAMPLEBARCODETYPENAME

public static final String SAMPLEBARCODETYPE_SAMPLEBARCODETYPENAME

See Also:

Constant Field Values

SAMPLEBARCODENAME

public static final String SAMPLEBARCODENAME

See Also:

Constant Field Values

Constructor Detail

SampleBarcode

public SampleBarcode()

SampleBarcode

public SampleBarcode(SampleBarcode copyMe)
              throws Exception

copy constructor

Throws:

Exception

Method Detail

query

public static Query<? extends SampleBarcode> query(Database db)

Shorthand for db.query(SampleBarcode.class).

find

public static List<? extends SampleBarcode> find(Database db,
                                                 QueryRule... rules)
                                          throws DatabaseException

Shorthand for db.find(SampleBarcode.class, org.molgenis.framework.db.QueryRule ... rules).

Throws:

DatabaseException

findById

public static SampleBarcode findById(Database db,
                                     Integer id)
                              throws DatabaseException

Throws:

DatabaseException

findBySampleBarcodeName

public static SampleBarcode findBySampleBarcodeName(Database db,
                                                    String sampleBarcodeName)
                                             throws DatabaseException

Throws:

DatabaseException

findBySampleBarcodeTypeSampleBarcodeNrSampleBarcodeSequence

public static SampleBarcode findBySampleBarcodeTypeSampleBarcodeNrSampleBarcodeSequence(Database db,
                                                                                        Integer sampleBarcodeType,
                                                                                        String sampleBarcodeNr,
                                                                                        String sampleBarcodeSequence)
                                                                                 throws DatabaseException

Throws:

DatabaseException

getId

public Integer getId()

Get the automatically generated internal id, only for internal use..

Specified by:

getId in interface Autoid

Returns:

id.

setId

public void setId(Integer id)

Set the automatically generated internal id, only for internal use..

Specified by:

setId in interface Autoid

Parameters:

id -

getSampleBarcodeNr

public String getSampleBarcodeNr()

Get the The identifier of a barcode given by the supplier.

Returns:

sampleBarcodeNr.

getSampleBarcodeNr

@Deprecated
public String getSampleBarcodeNr(Database db)

Deprecated.

setSampleBarcodeNr

public void setSampleBarcodeNr(String sampleBarcodeNr)

Set the The identifier of a barcode given by the supplier.

Parameters:

sampleBarcodeNr -

getSampleBarcodeSequence

public String getSampleBarcodeSequence()

Get the The nucleotide sequence which forms the barcode.

Returns:

sampleBarcodeSequence.

getSampleBarcodeSequence

@Deprecated
public String getSampleBarcodeSequence(Database db)

Deprecated.

setSampleBarcodeSequence

public void setSampleBarcodeSequence(String sampleBarcodeSequence)

Set the The nucleotide sequence which forms the barcode.

Parameters:

sampleBarcodeSequence -

getSampleBarcodeType

public SampleBarcodeType getSampleBarcodeType()

Get the Type.

Returns:

sampleBarcodeType.

getSampleBarcodeType

@Deprecated
public SampleBarcodeType getSampleBarcodeType(Database db)

Deprecated.

setSampleBarcodeType

public void setSampleBarcodeType(SampleBarcodeType sampleBarcodeType)

Set the Type.

Parameters:

sampleBarcodeType -

setSampleBarcodeType_Id

public void setSampleBarcodeType_Id(Integer sampleBarcodeType_id)

Set foreign key for field sampleBarcodeType. This will erase any foreign key objects currently set. FIXME: can we autoload the new object?

setSampleBarcodeType

public void setSampleBarcodeType(Integer sampleBarcodeType_id)

getSampleBarcodeType_Id

public Integer getSampleBarcodeType_Id()

getSampleBarcodeType_SampleBarcodeTypeName

public String getSampleBarcodeType_SampleBarcodeTypeName()

Get a pretty label SampleBarcodeTypeName for cross reference SampleBarcodeType to SampleBarcodeType.Id.

setSampleBarcodeType_SampleBarcodeTypeName

public void setSampleBarcodeType_SampleBarcodeTypeName(String sampleBarcodeType_SampleBarcodeTypeName)

Set a pretty label for cross reference SampleBarcodeType to SampleBarcodeType.Id. Implies setSampleBarcodeType(null) until save

getSampleBarcodeName

public String getSampleBarcodeName()

Get the A concatenated value of Type, Nr and Sequence.

Returns:

sampleBarcodeName.

getSampleBarcodeName

@Deprecated
public String getSampleBarcodeName(Database db)

Deprecated.

setSampleBarcodeName

public void setSampleBarcodeName(String sampleBarcodeName)

Set the A concatenated value of Type, Nr and Sequence.

Parameters:

sampleBarcodeName -

get

public Object get(String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

validate

public void validate()
              throws DatabaseException

Specified by:

validate in interface Entity

Throws:

DatabaseException

set

public void set(Tuple tuple,
                boolean strict)
         throws Exception

Specified by:

set in interface Entity

Throws:

Exception

toString

public String toString()

Overrides:

toString in class Object

toString

public String toString(boolean verbose)

getFields

public Vector<String> getFields(boolean skipAutoIds)

Get the names of all public properties of SampleBarcode.

Specified by:

getFields in interface Entity

getFields

public Vector<String> getFields()

Specified by:

getFields in interface Entity

getIdField

public String getIdField()

Specified by:

getIdField in interface Entity

getLabelFields

public List<String> getLabelFields()

Specified by:

getLabelFields in interface Entity

getFields

@Deprecated
public String getFields(String sep)

Deprecated.

Specified by:

getFields in interface Entity

getIdValue

public Object getIdValue()

Specified by:

getIdValue in interface Entity

getXrefIdFieldName

public String getXrefIdFieldName(String fieldName)

Specified by:

getXrefIdFieldName in interface Entity

getValues

@Deprecated
public String getValues(String sep)

Deprecated.

Specified by:

getValues in interface Entity

Overrides:

getValues in class AbstractEntity

create

public SampleBarcode create(Tuple tuple)
                     throws Exception

Specified by:

create in interface Entity

Throws:

Exception

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object