Uses of Class
org.molgenis.omx.ngs.Sample

Packages that use Sample

org.molgenis.omx.ngs
org.molgenis.omx.ngs.db
org.molgenis.omx.ngs.ui
org.molgenis.service
org.molgenis.ui

Uses of Sample in org.molgenis.omx.ngs

Methods in org.molgenis.omx.ngs that return Sample

Sample	Sample.create(Tuple tuple)
static Sample	Sample.findById(Database db, Integer id)
static Sample	Sample.findByInternalId(Database db, String internalId)
Sample	Sample_SampleInPool.getSample() Get the .
Sample	FlowcellLane.getSample() Get the Sample.
Sample	Sample_SampleInPool.getSample(Database db) Deprecated.
Sample	FlowcellLane.getSample(Database db) Deprecated.
Sample	Sample_SampleInPool.getSampleInPool() Get the .
Sample	Sample_SampleInPool.getSampleInPool(Database db) Deprecated.

Methods in org.molgenis.omx.ngs that return types with arguments of type Sample

static List<? extends Sample>	Sample.find(Database db, QueryRule... rules) Shorthand for db.find(Sample.class, org.molgenis.framework.db.QueryRule ...
List<Sample>	Sample.getSampleInPool() Get the List of samples inside the pool.
List<Sample>	Sample.getSampleInPool(Database db) Deprecated.
Collection<Sample>	Sample.getSampleInPoolSampleCollection()
Collection<Sample>	Sample.getSampleInPoolSampleCollection(Database db)
static Query<? extends Sample>	Sample.query(Database db) Shorthand for db.query(Sample.class).

Methods in org.molgenis.omx.ngs with parameters of type Sample

void	Sample_SampleInPool.setSample(Sample sample) Set the .
void	FlowcellLane.setSample(Sample sample) Set the Sample.
void	Sample.setSampleInPool(Sample... sampleInPool)
void	Sample_SampleInPool.setSampleInPool(Sample sampleInPool) Set the .

Method parameters in org.molgenis.omx.ngs with type arguments of type Sample

void	Sample.setSampleInPool(List<Sample> sampleInPool) Set the List of samples inside the pool.
void	Sample.setSampleInPoolSampleCollection(Collection<Sample> collection)

Constructors in org.molgenis.omx.ngs with parameters of type Sample

Sample(Sample copyMe)
copy constructor

Uses of Sample in org.molgenis.omx.ngs.db

Classes in org.molgenis.omx.ngs.db with type parameters of type Sample

class

SampleSecurityDecorator<E extends Sample> TODO add column level security filters

Methods in org.molgenis.omx.ngs.db that return Sample

Sample

SampleJpaMapper.create()

Methods in org.molgenis.omx.ngs.db that return types with arguments of type Sample

List<Sample>

SampleJpaMapper.createList(int size) Return EMPTY list of given allocated size

Methods in org.molgenis.omx.ngs.db with parameters of type Sample

void	SampleJpaMapper.create(Sample entity) This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
void	SampleJpaMapper.destroy(Sample sample)
void	SampleJpaMapper.edit(Sample sample)

Method parameters in org.molgenis.omx.ngs.db with type arguments of type Sample

int	SampleJpaMapper.executeAdd(List<? extends Sample> entities)
int	SampleJpaMapper.executeRemove(List<? extends Sample> entities)
int	SampleJpaMapper.executeUpdate(List<? extends Sample> entities)
void	SampleJpaMapper.prepareFileAttachements(List<Sample> entities, File baseDir)
void	SampleJpaMapper.resolveForeignKeys(List<Sample> entities)
boolean	SampleJpaMapper.saveFileAttachements(List<Sample> entities, File baseDir)

Uses of Sample in org.molgenis.omx.ngs.ui

Methods in org.molgenis.omx.ngs.ui that return types with arguments of type Sample

Class<Sample>

SampleForm.getEntityClass()

Constructors in org.molgenis.omx.ngs.ui with parameters of type Sample

SampleForm(Sample entity)

Uses of Sample in org.molgenis.service

Methods in org.molgenis.service that return Sample

Sample	SampleService.create(Sample sample)
Sample	SampleService.read(Integer id)

Methods in org.molgenis.service that return types with arguments of type Sample

Iterable<Sample>	SampleService.readAll()
EntityPager<Sample>	SampleService.readAll(int start, int num, List<QueryRule> queryRules)

Methods in org.molgenis.service with parameters of type Sample

Sample	SampleService.create(Sample sample)
void	SampleService.update(Sample sample)

Uses of Sample in org.molgenis.ui

Methods in org.molgenis.ui that return types with arguments of type Sample

Class<Sample>	Samples2FormController.getEntityClass()
Class<Sample>	Samples1FormController.getEntityClass()

Methods in org.molgenis.ui with parameters of type Sample

HtmlForm	Samples2FormController.getInputs(Sample entity, boolean newrecord)
HtmlForm	Samples1FormController.getInputs(Sample entity, boolean newrecord)