Serialized Form

Package org.molgenis

Class org.molgenis.JDBCMetaDatabase extends Model implements Serializable

serialVersionUID: 1L

Class org.molgenis.MolgenisOptions extends Object implements Serializable

serialVersionUID: 1L

Serialized Fields

molgenis_properties

String molgenis_properties

molgenis_passwd

String molgenis_passwd

model_database

ArrayList<E> model_database

import_model_database

ArrayList<E> import_model_database

model_userinterface

String model_userinterface

example_data_dir

String example_data_dir

output_dir

String output_dir

output_python

String output_python

output_src

String output_src

output_hand

String output_hand

output_sql

String output_sql

output_doc

String output_doc

output_web

String output_web

db_driver

String db_driver

db_user

String db_user

decorator_overriders

String decorator_overriders

db_password

String db_password

db_uri

String db_uri

db_filepath

String db_filepath

db_test_user

String db_test_user

db_test_password

String db_test_password

db_test_uri

String db_test_uri

db_jndiname

String db_jndiname

object_relational_mapping

String object_relational_mapping

mapper_implementation

MolgenisOptions.MapperImplementation mapper_implementation

jpa_persistenceUnitName

String jpa_persistenceUnitName

generate_persistence

boolean generate_persistence

hibernate_dialect

String hibernate_dialect

jpa_use_sequence

boolean jpa_use_sequence

exclude_system

boolean exclude_system

auth_loginclass

String auth_loginclass

auth_use_dialog

boolean auth_use_dialog

auth_redirect

String auth_redirect

mail_smtp_from

String mail_smtp_from

mail_smtp_protocol

String mail_smtp_protocol

mail_smtp_hostname

String mail_smtp_hostname

mail_smtp_port

int mail_smtp_port

mail_smtp_user

String mail_smtp_user

mail_smtp_au

String mail_smtp_au

generate_R

boolean generate_R

generate_BOT

boolean generate_BOT

render_decorator

String render_decorator

generate_doc

boolean generate_doc

generate_entityio

boolean generate_entityio

generate_Python

boolean generate_Python

generate_tests

boolean generate_tests

generate_gui

boolean generate_gui

db_mode

String db_mode

output_cpp

String output_cpp

generate_cpp

boolean generate_cpp

generate_model

boolean generate_model

generate_sql

boolean generate_sql

generate_html

boolean generate_html

generate_rdf

boolean generate_rdf

generate_rest

boolean generate_rest

generate_soap

boolean generate_soap

generate_plugins

boolean generate_plugins

generate_mobile

boolean generate_mobile

generate_decorators

boolean generate_decorators

generate_frontcontroller

boolean generate_frontcontroller

generate_options

boolean generate_options

generate_metadata

boolean generate_metadata

generate_db

boolean generate_db

delete_generated_folder

boolean delete_generated_folder

authorizable

ArrayList<E> authorizable

services

ArrayList<E> services

disable_decorators

boolean disable_decorators

log4j_properties_uri

String log4j_properties_uri

log_level

org.apache.log4j.Level log_level

log_target

MolgenisOptions.LogTarget log_target

hibernate_search_index_base

String hibernate_search_index_base

block_webspiders

boolean block_webspiders

path

String path

Package org.molgenis.ngs.plugins.header

Class org.molgenis.ngs.plugins.header.Header extends PluginModel<Entity> implements Serializable

serialVersionUID: 1L

Serialized Fields

headerModel

Header.HeaderModel headerModel

Package org.molgenis.ngs.plugins.home

Class org.molgenis.ngs.plugins.home.Home extends PluginModel<Entity> implements Serializable

serialVersionUID: 1L

Serialized Fields

homeModel

Home.HomeModel homeModel

Package org.molgenis.ngs.plugins.worksheet

Class org.molgenis.ngs.plugins.worksheet.Worksheet extends PluginModel<Entity> implements Serializable

serialVersionUID: 1L

Serialized Fields

currentRows

List<E> currentRows

Package org.molgenis.omx.ngs

Class org.molgenis.omx.ngs.CapturingKit extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

capturingKitName

String capturingKitName

Class org.molgenis.omx.ngs.Flowcell extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

flowcellDirection

String flowcellDirection

flowcellDirection_label

String flowcellDirection_label

flowcellName

String flowcellName

machine

Machine machine

machine_id

Integer machine_id

machine_MachineName

String machine_MachineName

run

String run

runDate

Date runDate

Class org.molgenis.omx.ngs.FlowcellLane extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

flowcell

Flowcell flowcell

flowcell_id

Integer flowcell_id

flowcell_FlowcellName

String flowcell_FlowcellName

lane

String lane

lane_label

String lane_label

sample

Sample sample

sample_id

Integer sample_id

sample_InternalId

String sample_InternalId

flowcellLaneComment

String flowcellLaneComment

qcWetMet

String qcWetMet

qcWetMet_label

String qcWetMet_label

qcWetUser

NgsUser qcWetUser

qcWetUser_id

Integer qcWetUser_id

qcWetUser_UserName

String qcWetUser_UserName

qcWetDate

Date qcWetDate

qcDryMet

String qcDryMet

qcDryMet_label

String qcDryMet_label

qcDryUser

NgsUser qcDryUser

qcDryUser_id

Integer qcDryUser_id

qcDryUser_UserName

String qcDryUser_UserName

qcDryDate

Date qcDryDate

Class org.molgenis.omx.ngs.Machine extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

machineName

String machineName

Class org.molgenis.omx.ngs.NgsUser extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

userName

String userName

userEmail

String userEmail

userRole

String userRole

userRole_label

String userRole_label

userGroup

String userGroup

userGroup_label

String userGroup_label

projectAnalistProjectCollection

Collection<E> projectAnalistProjectCollection

Class org.molgenis.omx.ngs.PrepKit extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

prepKitName

String prepKitName

Class org.molgenis.omx.ngs.Project extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

projectName

String projectName

projectComment

String projectComment

projectCustomer

NgsUser projectCustomer

projectCustomer_id

Integer projectCustomer_id

projectCustomer_UserName

String projectCustomer_UserName

projectAnalist

List<E> projectAnalist

projectAnalist_id

List<E> projectAnalist_id

projectAnalist_UserName

List<E> projectAnalist_UserName

projectPlannedFinishDate

Date projectPlannedFinishDate

laneAmount

Integer laneAmount

sampleAmount

Integer sampleAmount

sampleType

String sampleType

sampleType_label

String sampleType_label

seqType

String seqType

seqType_label

String seqType_label

prepKit

PrepKit prepKit

prepKit_id

Integer prepKit_id

prepKit_PrepKitName

String prepKit_PrepKitName

declarationNr

String declarationNr

gccAnalysis

Boolean gccAnalysis

gccInstructions

String gccInstructions

resultFilesDir

String resultFilesDir

resultShippedUser

NgsUser resultShippedUser

resultShippedUser_id

Integer resultShippedUser_id

resultShippedUser_UserName

String resultShippedUser_UserName

resultShippedTo

NgsUser resultShippedTo

resultShippedTo_id

Integer resultShippedTo_id

resultShippedTo_UserName

String resultShippedTo_UserName

resultShippedDate

Date resultShippedDate

Class org.molgenis.omx.ngs.Project_ProjectAnalist extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

autoid

Integer autoid

projectAnalist

NgsUser projectAnalist

projectAnalist_id

Integer projectAnalist_id

projectAnalist_UserName

String projectAnalist_UserName

project

Project project

project_id

Integer project_id

project_ProjectName

String project_ProjectName

Class org.molgenis.omx.ngs.Sample extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

internalId

String internalId

externalId

String externalId

sampleComment

String sampleComment

projectId

Project projectId

projectId_id

Integer projectId_id

projectId_ProjectName

String projectId_ProjectName

arrayFile

String arrayFile

arrayId

String arrayId

capturingKit

CapturingKit capturingKit

capturingKit_id

Integer capturingKit_id

capturingKit_CapturingKitName

String capturingKit_CapturingKitName

sampleBarcode

SampleBarcode sampleBarcode

sampleBarcode_id

Integer sampleBarcode_id

sampleBarcode_SampleBarcodeName

String sampleBarcode_SampleBarcodeName

sampleInPool

List<E> sampleInPool

sampleInPool_id

List<E> sampleInPool_id

sampleInPool_InternalId

List<E> sampleInPool_InternalId

labStatus

String labStatus

labStatus_label

String labStatus_label

sampleInPoolSampleCollection

Collection<E> sampleInPoolSampleCollection

Class org.molgenis.omx.ngs.Sample_SampleInPool extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

autoid

Integer autoid

sampleInPool

Sample sampleInPool

sampleInPool_id

Integer sampleInPool_id

sampleInPool_InternalId

String sampleInPool_InternalId

sample

Sample sample

sample_id

Integer sample_id

sample_InternalId

String sample_InternalId

Class org.molgenis.omx.ngs.SampleBarcode extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

sampleBarcodeNr

String sampleBarcodeNr

sampleBarcodeSequence

String sampleBarcodeSequence

sampleBarcodeType

SampleBarcodeType sampleBarcodeType

sampleBarcodeType_id

Integer sampleBarcodeType_id

sampleBarcodeType_SampleBarcodeTypeName

String sampleBarcodeType_SampleBarcodeTypeName

sampleBarcodeName

String sampleBarcodeName

Class org.molgenis.omx.ngs.SampleBarcodeType extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

sampleBarcodeTypeName

String sampleBarcodeTypeName

Package org.molgenis.servlet

Class org.molgenis.servlet.FrontController extends MolgenisFrontController implements Serializable

serialVersionUID: 3141439968743510237L

Class org.molgenis.servlet.UsedMolgenisOptions extends MolgenisOptions implements Serializable

serialVersionUID: 345675892563442346L

Serialized Fields

appName

String appName

Package org.molgenis.ui

Class org.molgenis.ui.CapturingKitsFormController extends FormController<CapturingKit> implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.ConfigurationMenu extends MenuController implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.FlowcellLanesFormController extends FormController<FlowcellLane> implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.FlowcellRunsFormController extends FormController<Flowcell> implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.FlowcellsFormController extends FormController<Flowcell> implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.HomePlugin extends Home implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.MainMenu extends MenuController implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.Ngs_HeaderPlugin extends Header implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.PrepKitsFormController extends FormController<PrepKit> implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.ProjectsFormController extends FormController<Project> implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.SampleBarcodesFormController extends FormController<SampleBarcode> implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.SampleBarcodeTypesFormController extends FormController<SampleBarcodeType> implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.Samples1FormController extends FormController<Sample> implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.Samples2FormController extends FormController<Sample> implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.SequencersFormController extends FormController<Machine> implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.SimpleUserLoginPlugin extends SimpleUserLogin implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.UsersFormController extends FormController<NgsUser> implements Serializable

serialVersionUID: 1L

Class org.molgenis.ui.WorksheetPlugin extends Worksheet implements Serializable

serialVersionUID: 1L