org.molgenis.sampletab
Class SampleTabOmxConverter

java.lang.Object
  org.molgenis.sampletab.SampleTabOmxConverter

public class SampleTabOmxConverter
extends Object

Constructor Summary

SampleTabOmxConverter(String inputFilePath, String submissionID)

Method Summary

void	addDataSet(ExcelWriter writer)
void	addObserableFeatureTab(ExcelWriter writer, List<String> listOfObservableFeatures)
void	addOntologyTermTab(ExcelWriter writer)
void	addProtocolTab(ExcelWriter writer, List<String> listOfObservableFeatures)
void	addSDataSetMatrix(ExcelWriter writer, ExcelSheetReader inputSheet, List<String> listOfObservableFeatures)
List<String>	collectColumns(ExcelSheetReader sheet)
List<String>	collectObservableFeatures(List<String> listOfColumns)
String	createIdentifier(String originalName)
static void	main(String[] args)
String	pattenMatchExtractFeature(String originalName)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SampleTabOmxConverter

public SampleTabOmxConverter(String inputFilePath,
                             String submissionID)
                      throws IOException

Throws:

IOException

Method Detail

addOntologyTermTab

public void addOntologyTermTab(ExcelWriter writer)
                        throws IOException

Throws:

IOException

addObserableFeatureTab

public void addObserableFeatureTab(ExcelWriter writer,
                                   List<String> listOfObservableFeatures)
                            throws IOException

Throws:

IOException

addProtocolTab

public void addProtocolTab(ExcelWriter writer,
                           List<String> listOfObservableFeatures)
                    throws IOException

Throws:

IOException

addSDataSetMatrix

public void addSDataSetMatrix(ExcelWriter writer,
                              ExcelSheetReader inputSheet,
                              List<String> listOfObservableFeatures)
                       throws IOException

Throws:

IOException

addDataSet

public void addDataSet(ExcelWriter writer)
                throws IOException

Throws:

IOException

collectObservableFeatures

public List<String> collectObservableFeatures(List<String> listOfColumns)

collectColumns

public List<String> collectColumns(ExcelSheetReader sheet)
                            throws IOException

Throws:

IOException

pattenMatchExtractFeature

public String pattenMatchExtractFeature(String originalName)

createIdentifier

public String createIdentifier(String originalName)

main

public static void main(String[] args)
                 throws IOException

Throws:

IOException