org.molgenis.controller

Class AccessionController

java.lang.Object

org.molgenis.controller.AccessionController

@Lazy
@Controller
@RequestMapping(value="/api/v1/accession")
public class AccessionController
extends Object

Constructor Summary

Constructors

Constructor and Description
AccessionController()

Method Summary

Methods

Modifier and Type	Method and Description
void	binder(org.springframework.web.bind.WebDataBinder binder)
org.springframework.http.ResponseEntity<org.molgenis.controller.AccessionController.AccessionResponse>	createAccession(org.molgenis.controller.AccessionController.AccessionRequest accessionRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.AccessionController.AccessionResponse>	createAccessionFromForm(org.molgenis.controller.AccessionController.AccessionRequest accessionRequest)
void	deleteAccession(Integer id)
void	deleteAccessionPost(Integer id)
ErrorMessageResponse	handleDatabaseAccessException(DatabaseAccessException e)
ErrorMessageResponse	handleDatabaseException(DatabaseException e)
ErrorMessageResponse	handleEntityNotFoundException(EntityNotFoundException e)
ErrorMessageResponse	handleRuntimeException(RuntimeException e)
org.molgenis.controller.AccessionController.AccessionResponse	retrieveAccession(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.AccessionController.AccessionResponse>	retrieveAccessionCollection(EntityCollectionRequest accessionCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.AccessionController.AccessionResponse>	retrieveAccessionCollectionJson(EntityCollectionRequest accessionCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.AccessionController.AccessionResponse>	retrieveAccessionCollectionJsonPost(EntityCollectionRequest accessionCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.AccessionController.AccessionResponse>	retrieveAccessionCollectionPost(EntityCollectionRequest accessionCollectionRequest, String... expandFields)
org.molgenis.controller.AccessionController.AccessionResponse	retrieveAccessionJson(Integer id, String... expandFields)
String	retrieveAccessionXrefOntology(Integer id, String... expandFields)
String	retrieveAccessionXrefOntologyJson(Integer id, String... expandFields)
void	updateAccession(Integer id, org.molgenis.controller.AccessionController.AccessionRequest accessionRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.AccessionController.AccessionResponse>	updateAccessionFromForm(Integer id, String _method, org.molgenis.controller.AccessionController.AccessionRequest accessionRequest)
void	updateAccessionFromFormPost(Integer id, org.molgenis.controller.AccessionController.AccessionRequest accessionRequest)
void	updateAccessionPost(Integer id, org.molgenis.controller.AccessionController.AccessionRequest accessionRequest)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AccessionController

public AccessionController()

Method Detail

createAccession

@RequestMapping(method=POST)
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.AccessionController.AccessionResponse> createAccession(@RequestBody
                                                                                                                                                 org.molgenis.controller.AccessionController.AccessionRequest accessionRequest)
                                                                                                                       throws DatabaseException

Throws:

DatabaseException

createAccessionFromForm

@RequestMapping(method=POST,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.AccessionController.AccessionResponse> createAccessionFromForm(@ModelAttribute
                                                                                                                                                         org.molgenis.controller.AccessionController.AccessionRequest accessionRequest)
                                                                                                                               throws DatabaseException

Throws:

DatabaseException

retrieveAccession

@RequestMapping(value="/{id}",
                method=GET)
@ResponseBody
public org.molgenis.controller.AccessionController.AccessionResponse retrieveAccession(@PathVariable
                                                                                                          Integer id,
                                                                                                          @RequestParam(value="expand",required=false)
                                                                                                          String... expandFields)
                                                                                throws DatabaseException

Throws:

DatabaseException

retrieveAccessionJson

@RequestMapping(value="/{id}",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public org.molgenis.controller.AccessionController.AccessionResponse retrieveAccessionJson(@PathVariable
                                                                                                              Integer id,
                                                                                                              @RequestParam(value="expand",required=false)
                                                                                                              String... expandFields)
                                                                                    throws DatabaseException

Throws:

DatabaseException

binder

@InitBinder
public void binder(org.springframework.web.bind.WebDataBinder binder)

retrieveAccessionXrefOntology

@RequestMapping(value="/{id}/ontology",
                method=GET)
public String retrieveAccessionXrefOntology(@PathVariable
                                                  Integer id,
                                                  @RequestParam(value="expand",required=false)
                                                  String... expandFields)
                                     throws DatabaseException

Throws:

DatabaseException

retrieveAccessionXrefOntologyJson

@RequestMapping(value="/{id}/ontology",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveAccessionXrefOntologyJson(@PathVariable
                                                      Integer id,
                                                      @RequestParam(value="expand",required=false)
                                                      String... expandFields)
                                         throws DatabaseException

Throws:

DatabaseException

updateAccession

@RequestMapping(value="/{id}",
                method=PUT)
@ResponseStatus(value=OK)
public void updateAccession(@PathVariable
                                                 Integer id,
                                                 @RequestBody
                                                 org.molgenis.controller.AccessionController.AccessionRequest accessionRequest)
                     throws DatabaseException

Throws:

DatabaseException

updateAccessionFromForm

@RequestMapping(value="/{id}",
                method=PUT,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.AccessionController.AccessionResponse> updateAccessionFromForm(@PathVariable
                                                                                                                                                         Integer id,
                                                                                                                                                         @PathVariable
                                                                                                                                                         String _method,
                                                                                                                                                         @ModelAttribute
                                                                                                                                                         org.molgenis.controller.AccessionController.AccessionRequest accessionRequest)
                                                                                                                               throws DatabaseException

Throws:

DatabaseException

updateAccessionPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT")
@ResponseStatus(value=NO_CONTENT)
public void updateAccessionPost(@PathVariable
                                                     Integer id,
                                                     @RequestBody
                                                     org.molgenis.controller.AccessionController.AccessionRequest accessionRequest)
                         throws DatabaseException

Throws:

DatabaseException

updateAccessionFromFormPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT",
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseStatus(value=NO_CONTENT)
public void updateAccessionFromFormPost(@PathVariable
                                                             Integer id,
                                                             @ModelAttribute
                                                             org.molgenis.controller.AccessionController.AccessionRequest accessionRequest)
                                 throws DatabaseException

Throws:

DatabaseException

deleteAccession

@RequestMapping(value="/{id}",
                method=DELETE)
@ResponseStatus(value=NO_CONTENT)
public void deleteAccession(@PathVariable
                                                 Integer id)
                     throws DatabaseException

Throws:

DatabaseException

deleteAccessionPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=DELETE")
@ResponseStatus(value=NO_CONTENT)
public void deleteAccessionPost(@PathVariable
                                                     Integer id)
                         throws DatabaseException

Throws:

DatabaseException

retrieveAccessionCollection

@RequestMapping(method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.AccessionController.AccessionResponse> retrieveAccessionCollection(EntityCollectionRequest accessionCollectionRequest,
                                                                                                                                              @RequestParam(value="expand",required=false)
                                                                                                                                              String... expandFields)
                                                                                                                    throws DatabaseException

Throws:

DatabaseException

retrieveAccessionCollectionJson

@RequestMapping(method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.AccessionController.AccessionResponse> retrieveAccessionCollectionJson(EntityCollectionRequest accessionCollectionRequest,
                                                                                                                                                  @RequestParam(value="expand",required=false)
                                                                                                                                                  String... expandFields)
                                                                                                                        throws DatabaseException

Throws:

DatabaseException

retrieveAccessionCollectionPost

@RequestMapping(method=POST,
                params="_method=GET")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.AccessionController.AccessionResponse> retrieveAccessionCollectionPost(@RequestBody
                                                                                                                                                  EntityCollectionRequest accessionCollectionRequest,
                                                                                                                                                  @RequestParam(value="expand",required=false)
                                                                                                                                                  String... expandFields)
                                                                                                                        throws DatabaseException

Throws:

DatabaseException

retrieveAccessionCollectionJsonPost

@RequestMapping(method=POST,
                params={"_method=GET","format=json"},
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.AccessionController.AccessionResponse> retrieveAccessionCollectionJsonPost(@RequestBody
                                                                                                                                                      EntityCollectionRequest accessionCollectionRequest,
                                                                                                                                                      @RequestParam(value="expand",required=false)
                                                                                                                                                      String... expandFields)
                                                                                                                            throws DatabaseException

Throws:

DatabaseException

handleEntityNotFoundException

@ExceptionHandler(value=org.molgenis.framework.db.EntityNotFoundException.class)
@ResponseStatus(value=NOT_FOUND)
@ResponseBody
public ErrorMessageResponse handleEntityNotFoundException(EntityNotFoundException e)

handleDatabaseException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleDatabaseException(DatabaseException e)

handleDatabaseAccessException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseAccessException.class)
@ResponseStatus(value=UNAUTHORIZED)
@ResponseBody
public ErrorMessageResponse handleDatabaseAccessException(DatabaseAccessException e)

handleRuntimeException

@ExceptionHandler(value=java.lang.RuntimeException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleRuntimeException(RuntimeException e)