org.molgenis.controller

Class MarkerController

java.lang.Object

org.molgenis.controller.MarkerController

@Lazy
@Controller
@RequestMapping(value="/api/v1/marker")
public class MarkerController
extends Object

Constructor Summary

Constructors

Constructor and Description
MarkerController()

Method Summary

Methods

Modifier and Type	Method and Description
void	binder(org.springframework.web.bind.WebDataBinder binder)
org.springframework.http.ResponseEntity<org.molgenis.controller.MarkerController.MarkerResponse>	createMarker(org.molgenis.controller.MarkerController.MarkerRequest markerRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.MarkerController.MarkerResponse>	createMarkerFromForm(org.molgenis.controller.MarkerController.MarkerRequest markerRequest)
void	deleteMarker(Integer id)
void	deleteMarkerPost(Integer id)
ErrorMessageResponse	handleDatabaseAccessException(DatabaseAccessException e)
ErrorMessageResponse	handleDatabaseException(DatabaseException e)
ErrorMessageResponse	handleEntityNotFoundException(EntityNotFoundException e)
ErrorMessageResponse	handleRuntimeException(RuntimeException e)
org.molgenis.controller.MarkerController.MarkerResponse	retrieveMarker(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse>	retrieveMarkerCollection(EntityCollectionRequest markerCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse>	retrieveMarkerCollectionJson(EntityCollectionRequest markerCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse>	retrieveMarkerCollectionJsonPost(EntityCollectionRequest markerCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse>	retrieveMarkerCollectionPost(EntityCollectionRequest markerCollectionRequest, String... expandFields)
org.molgenis.controller.MarkerController.MarkerResponse	retrieveMarkerJson(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse>	retrieveMarkerMrefReportsFor(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse>	retrieveMarkerMrefReportsForJson(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
String	retrieveMarkerXrefChromosome(Integer id, String... expandFields)
String	retrieveMarkerXrefChromosomeJson(Integer id, String... expandFields)
void	updateMarker(Integer id, org.molgenis.controller.MarkerController.MarkerRequest markerRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.MarkerController.MarkerResponse>	updateMarkerFromForm(Integer id, String _method, org.molgenis.controller.MarkerController.MarkerRequest markerRequest)
void	updateMarkerFromFormPost(Integer id, org.molgenis.controller.MarkerController.MarkerRequest markerRequest)
void	updateMarkerPost(Integer id, org.molgenis.controller.MarkerController.MarkerRequest markerRequest)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MarkerController

public MarkerController()

Method Detail

createMarker

@RequestMapping(method=POST)
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.MarkerController.MarkerResponse> createMarker(@RequestBody
                                                                                                                                        org.molgenis.controller.MarkerController.MarkerRequest markerRequest)
                                                                                                              throws DatabaseException

Throws:

DatabaseException

createMarkerFromForm

@RequestMapping(method=POST,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.MarkerController.MarkerResponse> createMarkerFromForm(@ModelAttribute
                                                                                                                                                org.molgenis.controller.MarkerController.MarkerRequest markerRequest)
                                                                                                                      throws DatabaseException

Throws:

DatabaseException

retrieveMarker

@RequestMapping(value="/{id}",
                method=GET)
@ResponseBody
public org.molgenis.controller.MarkerController.MarkerResponse retrieveMarker(@PathVariable
                                                                                                 Integer id,
                                                                                                 @RequestParam(value="expand",required=false)
                                                                                                 String... expandFields)
                                                                       throws DatabaseException

Throws:

DatabaseException

retrieveMarkerJson

@RequestMapping(value="/{id}",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public org.molgenis.controller.MarkerController.MarkerResponse retrieveMarkerJson(@PathVariable
                                                                                                     Integer id,
                                                                                                     @RequestParam(value="expand",required=false)
                                                                                                     String... expandFields)
                                                                           throws DatabaseException

Throws:

DatabaseException

binder

@InitBinder
public void binder(org.springframework.web.bind.WebDataBinder binder)

retrieveMarkerXrefChromosome

@RequestMapping(value="/{id}/chromosome",
                method=GET)
public String retrieveMarkerXrefChromosome(@PathVariable
                                                 Integer id,
                                                 @RequestParam(value="expand",required=false)
                                                 String... expandFields)
                                    throws DatabaseException

Throws:

DatabaseException

retrieveMarkerXrefChromosomeJson

@RequestMapping(value="/{id}/chromosome",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveMarkerXrefChromosomeJson(@PathVariable
                                                     Integer id,
                                                     @RequestParam(value="expand",required=false)
                                                     String... expandFields)
                                        throws DatabaseException

Throws:

DatabaseException

retrieveMarkerMrefReportsFor

@RequestMapping(value="/{id}/reportsFor",
                method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse> retrieveMarkerMrefReportsFor(@PathVariable
                                                                                                                                         Integer id,
                                                                                                                                         EntityCollectionRequest entityCollectionRequest,
                                                                                                                                         @RequestParam(value="expand",required=false)
                                                                                                                                         String... expandFields)
                                                                                                               throws DatabaseException

Throws:

DatabaseException

retrieveMarkerMrefReportsForJson

@RequestMapping(value="/{id}/reportsFor",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse> retrieveMarkerMrefReportsForJson(@PathVariable
                                                                                                                                             Integer id,
                                                                                                                                             EntityCollectionRequest entityCollectionRequest,
                                                                                                                                             @RequestParam(value="expand",required=false)
                                                                                                                                             String... expandFields)
                                                                                                                   throws DatabaseException

Throws:

DatabaseException

updateMarker

@RequestMapping(value="/{id}",
                method=PUT)
@ResponseStatus(value=OK)
public void updateMarker(@PathVariable
                                              Integer id,
                                              @RequestBody
                                              org.molgenis.controller.MarkerController.MarkerRequest markerRequest)
                  throws DatabaseException

Throws:

DatabaseException

updateMarkerFromForm

@RequestMapping(value="/{id}",
                method=PUT,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.MarkerController.MarkerResponse> updateMarkerFromForm(@PathVariable
                                                                                                                                                Integer id,
                                                                                                                                                @PathVariable
                                                                                                                                                String _method,
                                                                                                                                                @ModelAttribute
                                                                                                                                                org.molgenis.controller.MarkerController.MarkerRequest markerRequest)
                                                                                                                      throws DatabaseException

Throws:

DatabaseException

updateMarkerPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT")
@ResponseStatus(value=NO_CONTENT)
public void updateMarkerPost(@PathVariable
                                                  Integer id,
                                                  @RequestBody
                                                  org.molgenis.controller.MarkerController.MarkerRequest markerRequest)
                      throws DatabaseException

Throws:

DatabaseException

updateMarkerFromFormPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT",
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseStatus(value=NO_CONTENT)
public void updateMarkerFromFormPost(@PathVariable
                                                          Integer id,
                                                          @ModelAttribute
                                                          org.molgenis.controller.MarkerController.MarkerRequest markerRequest)
                              throws DatabaseException

Throws:

DatabaseException

deleteMarker

@RequestMapping(value="/{id}",
                method=DELETE)
@ResponseStatus(value=NO_CONTENT)
public void deleteMarker(@PathVariable
                                              Integer id)
                  throws DatabaseException

Throws:

DatabaseException

deleteMarkerPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=DELETE")
@ResponseStatus(value=NO_CONTENT)
public void deleteMarkerPost(@PathVariable
                                                  Integer id)
                      throws DatabaseException

Throws:

DatabaseException

retrieveMarkerCollection

@RequestMapping(method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse> retrieveMarkerCollection(EntityCollectionRequest markerCollectionRequest,
                                                                                                                                     @RequestParam(value="expand",required=false)
                                                                                                                                     String... expandFields)
                                                                                                           throws DatabaseException

Throws:

DatabaseException

retrieveMarkerCollectionJson

@RequestMapping(method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse> retrieveMarkerCollectionJson(EntityCollectionRequest markerCollectionRequest,
                                                                                                                                         @RequestParam(value="expand",required=false)
                                                                                                                                         String... expandFields)
                                                                                                               throws DatabaseException

Throws:

DatabaseException

retrieveMarkerCollectionPost

@RequestMapping(method=POST,
                params="_method=GET")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse> retrieveMarkerCollectionPost(@RequestBody
                                                                                                                                         EntityCollectionRequest markerCollectionRequest,
                                                                                                                                         @RequestParam(value="expand",required=false)
                                                                                                                                         String... expandFields)
                                                                                                               throws DatabaseException

Throws:

DatabaseException

retrieveMarkerCollectionJsonPost

@RequestMapping(method=POST,
                params={"_method=GET","format=json"},
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse> retrieveMarkerCollectionJsonPost(@RequestBody
                                                                                                                                             EntityCollectionRequest markerCollectionRequest,
                                                                                                                                             @RequestParam(value="expand",required=false)
                                                                                                                                             String... expandFields)
                                                                                                                   throws DatabaseException

Throws:

DatabaseException

handleEntityNotFoundException

@ExceptionHandler(value=org.molgenis.framework.db.EntityNotFoundException.class)
@ResponseStatus(value=NOT_FOUND)
@ResponseBody
public ErrorMessageResponse handleEntityNotFoundException(EntityNotFoundException e)

handleDatabaseException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleDatabaseException(DatabaseException e)

handleDatabaseAccessException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseAccessException.class)
@ResponseStatus(value=UNAUTHORIZED)
@ResponseBody
public ErrorMessageResponse handleDatabaseAccessException(DatabaseAccessException e)

handleRuntimeException

@ExceptionHandler(value=java.lang.RuntimeException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleRuntimeException(RuntimeException e)