org.molgenis.controller

Class OntologyTermController

java.lang.Object

org.molgenis.controller.OntologyTermController

@Lazy
@Controller
@RequestMapping(value="/api/v1/ontologyterm")
public class OntologyTermController
extends Object

Constructor Summary

Constructors

Constructor and Description
OntologyTermController()

Method Summary

Methods

Modifier and Type	Method and Description
void	binder(org.springframework.web.bind.WebDataBinder binder)
org.springframework.http.ResponseEntity<org.molgenis.controller.OntologyTermController.OntologyTermResponse>	createOntologyTerm(org.molgenis.controller.OntologyTermController.OntologyTermRequest ontologyTermRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.OntologyTermController.OntologyTermResponse>	createOntologyTermFromForm(org.molgenis.controller.OntologyTermController.OntologyTermRequest ontologyTermRequest)
void	deleteOntologyTerm(Integer id)
void	deleteOntologyTermPost(Integer id)
ErrorMessageResponse	handleDatabaseAccessException(DatabaseAccessException e)
ErrorMessageResponse	handleDatabaseException(DatabaseException e)
ErrorMessageResponse	handleEntityNotFoundException(EntityNotFoundException e)
ErrorMessageResponse	handleRuntimeException(RuntimeException e)
org.molgenis.controller.OntologyTermController.OntologyTermResponse	retrieveOntologyTerm(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.OntologyTermController.OntologyTermResponse>	retrieveOntologyTermCollection(EntityCollectionRequest ontologyTermCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.OntologyTermController.OntologyTermResponse>	retrieveOntologyTermCollectionJson(EntityCollectionRequest ontologyTermCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.OntologyTermController.OntologyTermResponse>	retrieveOntologyTermCollectionJsonPost(EntityCollectionRequest ontologyTermCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.OntologyTermController.OntologyTermResponse>	retrieveOntologyTermCollectionPost(EntityCollectionRequest ontologyTermCollectionRequest, String... expandFields)
org.molgenis.controller.OntologyTermController.OntologyTermResponse	retrieveOntologyTermJson(Integer id, String... expandFields)
String	retrieveOntologyTermXrefOntology(Integer id, String... expandFields)
String	retrieveOntologyTermXrefOntologyJson(Integer id, String... expandFields)
void	updateOntologyTerm(Integer id, org.molgenis.controller.OntologyTermController.OntologyTermRequest ontologyTermRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.OntologyTermController.OntologyTermResponse>	updateOntologyTermFromForm(Integer id, String _method, org.molgenis.controller.OntologyTermController.OntologyTermRequest ontologyTermRequest)
void	updateOntologyTermFromFormPost(Integer id, org.molgenis.controller.OntologyTermController.OntologyTermRequest ontologyTermRequest)
void	updateOntologyTermPost(Integer id, org.molgenis.controller.OntologyTermController.OntologyTermRequest ontologyTermRequest)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OntologyTermController

public OntologyTermController()

Method Detail

createOntologyTerm

@RequestMapping(method=POST)
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.OntologyTermController.OntologyTermResponse> createOntologyTerm(@RequestBody
                                                                                                                                                          org.molgenis.controller.OntologyTermController.OntologyTermRequest ontologyTermRequest)
                                                                                                                                throws DatabaseException

Throws:

DatabaseException

createOntologyTermFromForm

@RequestMapping(method=POST,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.OntologyTermController.OntologyTermResponse> createOntologyTermFromForm(@ModelAttribute
                                                                                                                                                                  org.molgenis.controller.OntologyTermController.OntologyTermRequest ontologyTermRequest)
                                                                                                                                        throws DatabaseException

Throws:

DatabaseException

retrieveOntologyTerm

@RequestMapping(value="/{id}",
                method=GET)
@ResponseBody
public org.molgenis.controller.OntologyTermController.OntologyTermResponse retrieveOntologyTerm(@PathVariable
                                                                                                                   Integer id,
                                                                                                                   @RequestParam(value="expand",required=false)
                                                                                                                   String... expandFields)
                                                                                         throws DatabaseException

Throws:

DatabaseException

retrieveOntologyTermJson

@RequestMapping(value="/{id}",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public org.molgenis.controller.OntologyTermController.OntologyTermResponse retrieveOntologyTermJson(@PathVariable
                                                                                                                       Integer id,
                                                                                                                       @RequestParam(value="expand",required=false)
                                                                                                                       String... expandFields)
                                                                                             throws DatabaseException

Throws:

DatabaseException

binder

@InitBinder
public void binder(org.springframework.web.bind.WebDataBinder binder)

retrieveOntologyTermXrefOntology

@RequestMapping(value="/{id}/ontology",
                method=GET)
public String retrieveOntologyTermXrefOntology(@PathVariable
                                                     Integer id,
                                                     @RequestParam(value="expand",required=false)
                                                     String... expandFields)
                                        throws DatabaseException

Throws:

DatabaseException

retrieveOntologyTermXrefOntologyJson

@RequestMapping(value="/{id}/ontology",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveOntologyTermXrefOntologyJson(@PathVariable
                                                         Integer id,
                                                         @RequestParam(value="expand",required=false)
                                                         String... expandFields)
                                            throws DatabaseException

Throws:

DatabaseException

updateOntologyTerm

@RequestMapping(value="/{id}",
                method=PUT)
@ResponseStatus(value=OK)
public void updateOntologyTerm(@PathVariable
                                                    Integer id,
                                                    @RequestBody
                                                    org.molgenis.controller.OntologyTermController.OntologyTermRequest ontologyTermRequest)
                        throws DatabaseException

Throws:

DatabaseException

updateOntologyTermFromForm

@RequestMapping(value="/{id}",
                method=PUT,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.OntologyTermController.OntologyTermResponse> updateOntologyTermFromForm(@PathVariable
                                                                                                                                                                  Integer id,
                                                                                                                                                                  @PathVariable
                                                                                                                                                                  String _method,
                                                                                                                                                                  @ModelAttribute
                                                                                                                                                                  org.molgenis.controller.OntologyTermController.OntologyTermRequest ontologyTermRequest)
                                                                                                                                        throws DatabaseException

Throws:

DatabaseException

updateOntologyTermPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT")
@ResponseStatus(value=NO_CONTENT)
public void updateOntologyTermPost(@PathVariable
                                                        Integer id,
                                                        @RequestBody
                                                        org.molgenis.controller.OntologyTermController.OntologyTermRequest ontologyTermRequest)
                            throws DatabaseException

Throws:

DatabaseException

updateOntologyTermFromFormPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT",
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseStatus(value=NO_CONTENT)
public void updateOntologyTermFromFormPost(@PathVariable
                                                                Integer id,
                                                                @ModelAttribute
                                                                org.molgenis.controller.OntologyTermController.OntologyTermRequest ontologyTermRequest)
                                    throws DatabaseException

Throws:

DatabaseException

deleteOntologyTerm

@RequestMapping(value="/{id}",
                method=DELETE)
@ResponseStatus(value=NO_CONTENT)
public void deleteOntologyTerm(@PathVariable
                                                    Integer id)
                        throws DatabaseException

Throws:

DatabaseException

deleteOntologyTermPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=DELETE")
@ResponseStatus(value=NO_CONTENT)
public void deleteOntologyTermPost(@PathVariable
                                                        Integer id)
                            throws DatabaseException

Throws:

DatabaseException

retrieveOntologyTermCollection

@RequestMapping(method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.OntologyTermController.OntologyTermResponse> retrieveOntologyTermCollection(EntityCollectionRequest ontologyTermCollectionRequest,
                                                                                                                                                       @RequestParam(value="expand",required=false)
                                                                                                                                                       String... expandFields)
                                                                                                                             throws DatabaseException

Throws:

DatabaseException

retrieveOntologyTermCollectionJson

@RequestMapping(method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.OntologyTermController.OntologyTermResponse> retrieveOntologyTermCollectionJson(EntityCollectionRequest ontologyTermCollectionRequest,
                                                                                                                                                           @RequestParam(value="expand",required=false)
                                                                                                                                                           String... expandFields)
                                                                                                                                 throws DatabaseException

Throws:

DatabaseException

retrieveOntologyTermCollectionPost

@RequestMapping(method=POST,
                params="_method=GET")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.OntologyTermController.OntologyTermResponse> retrieveOntologyTermCollectionPost(@RequestBody
                                                                                                                                                           EntityCollectionRequest ontologyTermCollectionRequest,
                                                                                                                                                           @RequestParam(value="expand",required=false)
                                                                                                                                                           String... expandFields)
                                                                                                                                 throws DatabaseException

Throws:

DatabaseException

retrieveOntologyTermCollectionJsonPost

@RequestMapping(method=POST,
                params={"_method=GET","format=json"},
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.OntologyTermController.OntologyTermResponse> retrieveOntologyTermCollectionJsonPost(@RequestBody
                                                                                                                                                               EntityCollectionRequest ontologyTermCollectionRequest,
                                                                                                                                                               @RequestParam(value="expand",required=false)
                                                                                                                                                               String... expandFields)
                                                                                                                                     throws DatabaseException

Throws:

DatabaseException

handleEntityNotFoundException

@ExceptionHandler(value=org.molgenis.framework.db.EntityNotFoundException.class)
@ResponseStatus(value=NOT_FOUND)
@ResponseBody
public ErrorMessageResponse handleEntityNotFoundException(EntityNotFoundException e)

handleDatabaseException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleDatabaseException(DatabaseException e)

handleDatabaseAccessException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseAccessException.class)
@ResponseStatus(value=UNAUTHORIZED)
@ResponseBody
public ErrorMessageResponse handleDatabaseAccessException(DatabaseAccessException e)

handleRuntimeException

@ExceptionHandler(value=java.lang.RuntimeException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleRuntimeException(RuntimeException e)