org.molgenis.controller

Class ProbeController

java.lang.Object

org.molgenis.controller.ProbeController

@Lazy
@Controller
@RequestMapping(value="/api/v1/probe")
public class ProbeController
extends Object

Constructor Summary

Constructors

Constructor and Description
ProbeController()

Method Summary

Methods

Modifier and Type	Method and Description
void	binder(org.springframework.web.bind.WebDataBinder binder)
org.springframework.http.ResponseEntity<org.molgenis.controller.ProbeController.ProbeResponse>	createProbe(org.molgenis.controller.ProbeController.ProbeRequest probeRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.ProbeController.ProbeResponse>	createProbeFromForm(org.molgenis.controller.ProbeController.ProbeRequest probeRequest)
void	deleteProbe(Integer id)
void	deleteProbePost(Integer id)
ErrorMessageResponse	handleDatabaseAccessException(DatabaseAccessException e)
ErrorMessageResponse	handleDatabaseException(DatabaseException e)
ErrorMessageResponse	handleEntityNotFoundException(EntityNotFoundException e)
ErrorMessageResponse	handleRuntimeException(RuntimeException e)
org.molgenis.controller.ProbeController.ProbeResponse	retrieveProbe(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProbeController.ProbeResponse>	retrieveProbeCollection(EntityCollectionRequest probeCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProbeController.ProbeResponse>	retrieveProbeCollectionJson(EntityCollectionRequest probeCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProbeController.ProbeResponse>	retrieveProbeCollectionJsonPost(EntityCollectionRequest probeCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProbeController.ProbeResponse>	retrieveProbeCollectionPost(EntityCollectionRequest probeCollectionRequest, String... expandFields)
org.molgenis.controller.ProbeController.ProbeResponse	retrieveProbeJson(Integer id, String... expandFields)
String	retrieveProbeXrefChromosome(Integer id, String... expandFields)
String	retrieveProbeXrefChromosomeJson(Integer id, String... expandFields)
String	retrieveProbeXrefProbeSet(Integer id, String... expandFields)
String	retrieveProbeXrefProbeSetJson(Integer id, String... expandFields)
String	retrieveProbeXrefReportsFor(Integer id, String... expandFields)
String	retrieveProbeXrefReportsForJson(Integer id, String... expandFields)
void	updateProbe(Integer id, org.molgenis.controller.ProbeController.ProbeRequest probeRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.ProbeController.ProbeResponse>	updateProbeFromForm(Integer id, String _method, org.molgenis.controller.ProbeController.ProbeRequest probeRequest)
void	updateProbeFromFormPost(Integer id, org.molgenis.controller.ProbeController.ProbeRequest probeRequest)
void	updateProbePost(Integer id, org.molgenis.controller.ProbeController.ProbeRequest probeRequest)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProbeController

public ProbeController()

Method Detail

createProbe

@RequestMapping(method=POST)
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.ProbeController.ProbeResponse> createProbe(@RequestBody
                                                                                                                                     org.molgenis.controller.ProbeController.ProbeRequest probeRequest)
                                                                                                           throws DatabaseException

Throws:

DatabaseException

createProbeFromForm

@RequestMapping(method=POST,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.ProbeController.ProbeResponse> createProbeFromForm(@ModelAttribute
                                                                                                                                             org.molgenis.controller.ProbeController.ProbeRequest probeRequest)
                                                                                                                   throws DatabaseException

Throws:

DatabaseException

retrieveProbe

@RequestMapping(value="/{id}",
                method=GET)
@ResponseBody
public org.molgenis.controller.ProbeController.ProbeResponse retrieveProbe(@PathVariable
                                                                                              Integer id,
                                                                                              @RequestParam(value="expand",required=false)
                                                                                              String... expandFields)
                                                                    throws DatabaseException

Throws:

DatabaseException

retrieveProbeJson

@RequestMapping(value="/{id}",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public org.molgenis.controller.ProbeController.ProbeResponse retrieveProbeJson(@PathVariable
                                                                                                  Integer id,
                                                                                                  @RequestParam(value="expand",required=false)
                                                                                                  String... expandFields)
                                                                        throws DatabaseException

Throws:

DatabaseException

binder

@InitBinder
public void binder(org.springframework.web.bind.WebDataBinder binder)

retrieveProbeXrefChromosome

@RequestMapping(value="/{id}/chromosome",
                method=GET)
public String retrieveProbeXrefChromosome(@PathVariable
                                                Integer id,
                                                @RequestParam(value="expand",required=false)
                                                String... expandFields)
                                   throws DatabaseException

Throws:

DatabaseException

retrieveProbeXrefChromosomeJson

@RequestMapping(value="/{id}/chromosome",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveProbeXrefChromosomeJson(@PathVariable
                                                    Integer id,
                                                    @RequestParam(value="expand",required=false)
                                                    String... expandFields)
                                       throws DatabaseException

Throws:

DatabaseException

retrieveProbeXrefProbeSet

@RequestMapping(value="/{id}/probeSet",
                method=GET)
public String retrieveProbeXrefProbeSet(@PathVariable
                                              Integer id,
                                              @RequestParam(value="expand",required=false)
                                              String... expandFields)
                                 throws DatabaseException

Throws:

DatabaseException

retrieveProbeXrefProbeSetJson

@RequestMapping(value="/{id}/probeSet",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveProbeXrefProbeSetJson(@PathVariable
                                                  Integer id,
                                                  @RequestParam(value="expand",required=false)
                                                  String... expandFields)
                                     throws DatabaseException

Throws:

DatabaseException

retrieveProbeXrefReportsFor

@RequestMapping(value="/{id}/reportsFor",
                method=GET)
public String retrieveProbeXrefReportsFor(@PathVariable
                                                Integer id,
                                                @RequestParam(value="expand",required=false)
                                                String... expandFields)
                                   throws DatabaseException

Throws:

DatabaseException

retrieveProbeXrefReportsForJson

@RequestMapping(value="/{id}/reportsFor",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveProbeXrefReportsForJson(@PathVariable
                                                    Integer id,
                                                    @RequestParam(value="expand",required=false)
                                                    String... expandFields)
                                       throws DatabaseException

Throws:

DatabaseException

updateProbe

@RequestMapping(value="/{id}",
                method=PUT)
@ResponseStatus(value=OK)
public void updateProbe(@PathVariable
                                             Integer id,
                                             @RequestBody
                                             org.molgenis.controller.ProbeController.ProbeRequest probeRequest)
                 throws DatabaseException

Throws:

DatabaseException

updateProbeFromForm

@RequestMapping(value="/{id}",
                method=PUT,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.ProbeController.ProbeResponse> updateProbeFromForm(@PathVariable
                                                                                                                                             Integer id,
                                                                                                                                             @PathVariable
                                                                                                                                             String _method,
                                                                                                                                             @ModelAttribute
                                                                                                                                             org.molgenis.controller.ProbeController.ProbeRequest probeRequest)
                                                                                                                   throws DatabaseException

Throws:

DatabaseException

updateProbePost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT")
@ResponseStatus(value=NO_CONTENT)
public void updateProbePost(@PathVariable
                                                 Integer id,
                                                 @RequestBody
                                                 org.molgenis.controller.ProbeController.ProbeRequest probeRequest)
                     throws DatabaseException

Throws:

DatabaseException

updateProbeFromFormPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT",
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseStatus(value=NO_CONTENT)
public void updateProbeFromFormPost(@PathVariable
                                                         Integer id,
                                                         @ModelAttribute
                                                         org.molgenis.controller.ProbeController.ProbeRequest probeRequest)
                             throws DatabaseException

Throws:

DatabaseException

deleteProbe

@RequestMapping(value="/{id}",
                method=DELETE)
@ResponseStatus(value=NO_CONTENT)
public void deleteProbe(@PathVariable
                                             Integer id)
                 throws DatabaseException

Throws:

DatabaseException

deleteProbePost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=DELETE")
@ResponseStatus(value=NO_CONTENT)
public void deleteProbePost(@PathVariable
                                                 Integer id)
                     throws DatabaseException

Throws:

DatabaseException

retrieveProbeCollection

@RequestMapping(method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProbeController.ProbeResponse> retrieveProbeCollection(EntityCollectionRequest probeCollectionRequest,
                                                                                                                                  @RequestParam(value="expand",required=false)
                                                                                                                                  String... expandFields)
                                                                                                        throws DatabaseException

Throws:

DatabaseException

retrieveProbeCollectionJson

@RequestMapping(method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProbeController.ProbeResponse> retrieveProbeCollectionJson(EntityCollectionRequest probeCollectionRequest,
                                                                                                                                      @RequestParam(value="expand",required=false)
                                                                                                                                      String... expandFields)
                                                                                                            throws DatabaseException

Throws:

DatabaseException

retrieveProbeCollectionPost

@RequestMapping(method=POST,
                params="_method=GET")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProbeController.ProbeResponse> retrieveProbeCollectionPost(@RequestBody
                                                                                                                                      EntityCollectionRequest probeCollectionRequest,
                                                                                                                                      @RequestParam(value="expand",required=false)
                                                                                                                                      String... expandFields)
                                                                                                            throws DatabaseException

Throws:

DatabaseException

retrieveProbeCollectionJsonPost

@RequestMapping(method=POST,
                params={"_method=GET","format=json"},
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProbeController.ProbeResponse> retrieveProbeCollectionJsonPost(@RequestBody
                                                                                                                                          EntityCollectionRequest probeCollectionRequest,
                                                                                                                                          @RequestParam(value="expand",required=false)
                                                                                                                                          String... expandFields)
                                                                                                                throws DatabaseException

Throws:

DatabaseException

handleEntityNotFoundException

@ExceptionHandler(value=org.molgenis.framework.db.EntityNotFoundException.class)
@ResponseStatus(value=NOT_FOUND)
@ResponseBody
public ErrorMessageResponse handleEntityNotFoundException(EntityNotFoundException e)

handleDatabaseException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleDatabaseException(DatabaseException e)

handleDatabaseAccessException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseAccessException.class)
@ResponseStatus(value=UNAUTHORIZED)
@ResponseBody
public ErrorMessageResponse handleDatabaseAccessException(DatabaseAccessException e)

handleRuntimeException

@ExceptionHandler(value=java.lang.RuntimeException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleRuntimeException(RuntimeException e)