org.molgenis.controller

Class ProbeSetController

java.lang.Object

org.molgenis.controller.ProbeSetController

@Lazy
@Controller
@RequestMapping(value="/api/v1/probeset")
public class ProbeSetController
extends Object

Constructor Summary

Constructors

Constructor and Description
ProbeSetController()

Method Summary

Methods

Modifier and Type	Method and Description
void	binder(org.springframework.web.bind.WebDataBinder binder)
org.springframework.http.ResponseEntity<org.molgenis.controller.ProbeSetController.ProbeSetResponse>	createProbeSet(org.molgenis.controller.ProbeSetController.ProbeSetRequest probeSetRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.ProbeSetController.ProbeSetResponse>	createProbeSetFromForm(org.molgenis.controller.ProbeSetController.ProbeSetRequest probeSetRequest)
void	deleteProbeSet(Integer id)
void	deleteProbeSetPost(Integer id)
ErrorMessageResponse	handleDatabaseAccessException(DatabaseAccessException e)
ErrorMessageResponse	handleDatabaseException(DatabaseException e)
ErrorMessageResponse	handleEntityNotFoundException(EntityNotFoundException e)
ErrorMessageResponse	handleRuntimeException(RuntimeException e)
org.molgenis.controller.ProbeSetController.ProbeSetResponse	retrieveProbeSet(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProbeSetController.ProbeSetResponse>	retrieveProbeSetCollection(EntityCollectionRequest probeSetCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProbeSetController.ProbeSetResponse>	retrieveProbeSetCollectionJson(EntityCollectionRequest probeSetCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProbeSetController.ProbeSetResponse>	retrieveProbeSetCollectionJsonPost(EntityCollectionRequest probeSetCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProbeSetController.ProbeSetResponse>	retrieveProbeSetCollectionPost(EntityCollectionRequest probeSetCollectionRequest, String... expandFields)
org.molgenis.controller.ProbeSetController.ProbeSetResponse	retrieveProbeSetJson(Integer id, String... expandFields)
String	retrieveProbeSetXrefChromosome(Integer id, String... expandFields)
String	retrieveProbeSetXrefChromosomeJson(Integer id, String... expandFields)
void	updateProbeSet(Integer id, org.molgenis.controller.ProbeSetController.ProbeSetRequest probeSetRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.ProbeSetController.ProbeSetResponse>	updateProbeSetFromForm(Integer id, String _method, org.molgenis.controller.ProbeSetController.ProbeSetRequest probeSetRequest)
void	updateProbeSetFromFormPost(Integer id, org.molgenis.controller.ProbeSetController.ProbeSetRequest probeSetRequest)
void	updateProbeSetPost(Integer id, org.molgenis.controller.ProbeSetController.ProbeSetRequest probeSetRequest)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProbeSetController

public ProbeSetController()

Method Detail

createProbeSet

@RequestMapping(method=POST)
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.ProbeSetController.ProbeSetResponse> createProbeSet(@RequestBody
                                                                                                                                              org.molgenis.controller.ProbeSetController.ProbeSetRequest probeSetRequest)
                                                                                                                    throws DatabaseException

Throws:

DatabaseException

createProbeSetFromForm

@RequestMapping(method=POST,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.ProbeSetController.ProbeSetResponse> createProbeSetFromForm(@ModelAttribute
                                                                                                                                                      org.molgenis.controller.ProbeSetController.ProbeSetRequest probeSetRequest)
                                                                                                                            throws DatabaseException

Throws:

DatabaseException

retrieveProbeSet

@RequestMapping(value="/{id}",
                method=GET)
@ResponseBody
public org.molgenis.controller.ProbeSetController.ProbeSetResponse retrieveProbeSet(@PathVariable
                                                                                                       Integer id,
                                                                                                       @RequestParam(value="expand",required=false)
                                                                                                       String... expandFields)
                                                                             throws DatabaseException

Throws:

DatabaseException

retrieveProbeSetJson

@RequestMapping(value="/{id}",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public org.molgenis.controller.ProbeSetController.ProbeSetResponse retrieveProbeSetJson(@PathVariable
                                                                                                           Integer id,
                                                                                                           @RequestParam(value="expand",required=false)
                                                                                                           String... expandFields)
                                                                                 throws DatabaseException

Throws:

DatabaseException

binder

@InitBinder
public void binder(org.springframework.web.bind.WebDataBinder binder)

retrieveProbeSetXrefChromosome

@RequestMapping(value="/{id}/chromosome",
                method=GET)
public String retrieveProbeSetXrefChromosome(@PathVariable
                                                   Integer id,
                                                   @RequestParam(value="expand",required=false)
                                                   String... expandFields)
                                      throws DatabaseException

Throws:

DatabaseException

retrieveProbeSetXrefChromosomeJson

@RequestMapping(value="/{id}/chromosome",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveProbeSetXrefChromosomeJson(@PathVariable
                                                       Integer id,
                                                       @RequestParam(value="expand",required=false)
                                                       String... expandFields)
                                          throws DatabaseException

Throws:

DatabaseException

updateProbeSet

@RequestMapping(value="/{id}",
                method=PUT)
@ResponseStatus(value=OK)
public void updateProbeSet(@PathVariable
                                                Integer id,
                                                @RequestBody
                                                org.molgenis.controller.ProbeSetController.ProbeSetRequest probeSetRequest)
                    throws DatabaseException

Throws:

DatabaseException

updateProbeSetFromForm

@RequestMapping(value="/{id}",
                method=PUT,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.ProbeSetController.ProbeSetResponse> updateProbeSetFromForm(@PathVariable
                                                                                                                                                      Integer id,
                                                                                                                                                      @PathVariable
                                                                                                                                                      String _method,
                                                                                                                                                      @ModelAttribute
                                                                                                                                                      org.molgenis.controller.ProbeSetController.ProbeSetRequest probeSetRequest)
                                                                                                                            throws DatabaseException

Throws:

DatabaseException

updateProbeSetPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT")
@ResponseStatus(value=NO_CONTENT)
public void updateProbeSetPost(@PathVariable
                                                    Integer id,
                                                    @RequestBody
                                                    org.molgenis.controller.ProbeSetController.ProbeSetRequest probeSetRequest)
                        throws DatabaseException

Throws:

DatabaseException

updateProbeSetFromFormPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT",
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseStatus(value=NO_CONTENT)
public void updateProbeSetFromFormPost(@PathVariable
                                                            Integer id,
                                                            @ModelAttribute
                                                            org.molgenis.controller.ProbeSetController.ProbeSetRequest probeSetRequest)
                                throws DatabaseException

Throws:

DatabaseException

deleteProbeSet

@RequestMapping(value="/{id}",
                method=DELETE)
@ResponseStatus(value=NO_CONTENT)
public void deleteProbeSet(@PathVariable
                                                Integer id)
                    throws DatabaseException

Throws:

DatabaseException

deleteProbeSetPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=DELETE")
@ResponseStatus(value=NO_CONTENT)
public void deleteProbeSetPost(@PathVariable
                                                    Integer id)
                        throws DatabaseException

Throws:

DatabaseException

retrieveProbeSetCollection

@RequestMapping(method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProbeSetController.ProbeSetResponse> retrieveProbeSetCollection(EntityCollectionRequest probeSetCollectionRequest,
                                                                                                                                           @RequestParam(value="expand",required=false)
                                                                                                                                           String... expandFields)
                                                                                                                 throws DatabaseException

Throws:

DatabaseException

retrieveProbeSetCollectionJson

@RequestMapping(method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProbeSetController.ProbeSetResponse> retrieveProbeSetCollectionJson(EntityCollectionRequest probeSetCollectionRequest,
                                                                                                                                               @RequestParam(value="expand",required=false)
                                                                                                                                               String... expandFields)
                                                                                                                     throws DatabaseException

Throws:

DatabaseException

retrieveProbeSetCollectionPost

@RequestMapping(method=POST,
                params="_method=GET")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProbeSetController.ProbeSetResponse> retrieveProbeSetCollectionPost(@RequestBody
                                                                                                                                               EntityCollectionRequest probeSetCollectionRequest,
                                                                                                                                               @RequestParam(value="expand",required=false)
                                                                                                                                               String... expandFields)
                                                                                                                     throws DatabaseException

Throws:

DatabaseException

retrieveProbeSetCollectionJsonPost

@RequestMapping(method=POST,
                params={"_method=GET","format=json"},
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProbeSetController.ProbeSetResponse> retrieveProbeSetCollectionJsonPost(@RequestBody
                                                                                                                                                   EntityCollectionRequest probeSetCollectionRequest,
                                                                                                                                                   @RequestParam(value="expand",required=false)
                                                                                                                                                   String... expandFields)
                                                                                                                         throws DatabaseException

Throws:

DatabaseException

handleEntityNotFoundException

@ExceptionHandler(value=org.molgenis.framework.db.EntityNotFoundException.class)
@ResponseStatus(value=NOT_FOUND)
@ResponseBody
public ErrorMessageResponse handleEntityNotFoundException(EntityNotFoundException e)

handleDatabaseException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleDatabaseException(DatabaseException e)

handleDatabaseAccessException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseAccessException.class)
@ResponseStatus(value=UNAUTHORIZED)
@ResponseBody
public ErrorMessageResponse handleDatabaseAccessException(DatabaseAccessException e)

handleRuntimeException

@ExceptionHandler(value=java.lang.RuntimeException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleRuntimeException(RuntimeException e)