org.molgenis.controller

Class ProtocolController

java.lang.Object

org.molgenis.controller.ProtocolController

@Lazy
@Controller
@RequestMapping(value="/api/v1/protocol")
public class ProtocolController
extends Object

Constructor Summary

Constructors

Constructor and Description
ProtocolController()

Method Summary

Methods

Modifier and Type	Method and Description
void	binder(org.springframework.web.bind.WebDataBinder binder)
org.springframework.http.ResponseEntity<org.molgenis.controller.ProtocolController.ProtocolResponse>	createProtocol(org.molgenis.controller.ProtocolController.ProtocolRequest protocolRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.ProtocolController.ProtocolResponse>	createProtocolFromForm(org.molgenis.controller.ProtocolController.ProtocolRequest protocolRequest)
void	deleteProtocol(Integer id)
void	deleteProtocolPost(Integer id)
ErrorMessageResponse	handleDatabaseAccessException(DatabaseAccessException e)
ErrorMessageResponse	handleDatabaseException(DatabaseException e)
ErrorMessageResponse	handleEntityNotFoundException(EntityNotFoundException e)
ErrorMessageResponse	handleRuntimeException(RuntimeException e)
org.molgenis.controller.ProtocolController.ProtocolResponse	retrieveProtocol(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProtocolController.ProtocolResponse>	retrieveProtocolCollection(EntityCollectionRequest protocolCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProtocolController.ProtocolResponse>	retrieveProtocolCollectionJson(EntityCollectionRequest protocolCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProtocolController.ProtocolResponse>	retrieveProtocolCollectionJsonPost(EntityCollectionRequest protocolCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProtocolController.ProtocolResponse>	retrieveProtocolCollectionPost(EntityCollectionRequest protocolCollectionRequest, String... expandFields)
org.molgenis.controller.ProtocolController.ProtocolResponse	retrieveProtocolJson(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ObservableFeatureController.ObservableFeatureResponse>	retrieveProtocolMrefFeatures(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ObservableFeatureController.ObservableFeatureResponse>	retrieveProtocolMrefFeaturesJson(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ObservableFeatureController.ObservableFeatureResponse>	retrieveProtocolMrefRequiredFeatures(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ObservableFeatureController.ObservableFeatureResponse>	retrieveProtocolMrefRequiredFeaturesJson(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProtocolController.ProtocolResponse>	retrieveProtocolMrefSubprotocols(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.ProtocolController.ProtocolResponse>	retrieveProtocolMrefSubprotocolsJson(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
String	retrieveProtocolXrefProtocolType(Integer id, String... expandFields)
String	retrieveProtocolXrefProtocolTypeJson(Integer id, String... expandFields)
void	updateProtocol(Integer id, org.molgenis.controller.ProtocolController.ProtocolRequest protocolRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.ProtocolController.ProtocolResponse>	updateProtocolFromForm(Integer id, String _method, org.molgenis.controller.ProtocolController.ProtocolRequest protocolRequest)
void	updateProtocolFromFormPost(Integer id, org.molgenis.controller.ProtocolController.ProtocolRequest protocolRequest)
void	updateProtocolPost(Integer id, org.molgenis.controller.ProtocolController.ProtocolRequest protocolRequest)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProtocolController

public ProtocolController()

Method Detail

createProtocol

@RequestMapping(method=POST)
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.ProtocolController.ProtocolResponse> createProtocol(@RequestBody
                                                                                                                                              org.molgenis.controller.ProtocolController.ProtocolRequest protocolRequest)
                                                                                                                    throws DatabaseException

Throws:

DatabaseException

createProtocolFromForm

@RequestMapping(method=POST,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.ProtocolController.ProtocolResponse> createProtocolFromForm(@ModelAttribute
                                                                                                                                                      org.molgenis.controller.ProtocolController.ProtocolRequest protocolRequest)
                                                                                                                            throws DatabaseException

Throws:

DatabaseException

retrieveProtocol

@RequestMapping(value="/{id}",
                method=GET)
@ResponseBody
public org.molgenis.controller.ProtocolController.ProtocolResponse retrieveProtocol(@PathVariable
                                                                                                       Integer id,
                                                                                                       @RequestParam(value="expand",required=false)
                                                                                                       String... expandFields)
                                                                             throws DatabaseException

Throws:

DatabaseException

retrieveProtocolJson

@RequestMapping(value="/{id}",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public org.molgenis.controller.ProtocolController.ProtocolResponse retrieveProtocolJson(@PathVariable
                                                                                                           Integer id,
                                                                                                           @RequestParam(value="expand",required=false)
                                                                                                           String... expandFields)
                                                                                 throws DatabaseException

Throws:

DatabaseException

binder

@InitBinder
public void binder(org.springframework.web.bind.WebDataBinder binder)

retrieveProtocolXrefProtocolType

@RequestMapping(value="/{id}/protocolType",
                method=GET)
public String retrieveProtocolXrefProtocolType(@PathVariable
                                                     Integer id,
                                                     @RequestParam(value="expand",required=false)
                                                     String... expandFields)
                                        throws DatabaseException

Throws:

DatabaseException

retrieveProtocolXrefProtocolTypeJson

@RequestMapping(value="/{id}/protocolType",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveProtocolXrefProtocolTypeJson(@PathVariable
                                                         Integer id,
                                                         @RequestParam(value="expand",required=false)
                                                         String... expandFields)
                                            throws DatabaseException

Throws:

DatabaseException

retrieveProtocolMrefSubprotocols

@RequestMapping(value="/{id}/subprotocols",
                method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProtocolController.ProtocolResponse> retrieveProtocolMrefSubprotocols(@PathVariable
                                                                                                                                                 Integer id,
                                                                                                                                                 EntityCollectionRequest entityCollectionRequest,
                                                                                                                                                 @RequestParam(value="expand",required=false)
                                                                                                                                                 String... expandFields)
                                                                                                                       throws DatabaseException

Throws:

DatabaseException

retrieveProtocolMrefSubprotocolsJson

@RequestMapping(value="/{id}/subprotocols",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProtocolController.ProtocolResponse> retrieveProtocolMrefSubprotocolsJson(@PathVariable
                                                                                                                                                     Integer id,
                                                                                                                                                     EntityCollectionRequest entityCollectionRequest,
                                                                                                                                                     @RequestParam(value="expand",required=false)
                                                                                                                                                     String... expandFields)
                                                                                                                           throws DatabaseException

Throws:

DatabaseException

retrieveProtocolMrefFeatures

@RequestMapping(value="/{id}/features",
                method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ObservableFeatureController.ObservableFeatureResponse> retrieveProtocolMrefFeatures(@PathVariable
                                                                                                                                                               Integer id,
                                                                                                                                                               EntityCollectionRequest entityCollectionRequest,
                                                                                                                                                               @RequestParam(value="expand",required=false)
                                                                                                                                                               String... expandFields)
                                                                                                                                     throws DatabaseException

Throws:

DatabaseException

retrieveProtocolMrefFeaturesJson

@RequestMapping(value="/{id}/features",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ObservableFeatureController.ObservableFeatureResponse> retrieveProtocolMrefFeaturesJson(@PathVariable
                                                                                                                                                                   Integer id,
                                                                                                                                                                   EntityCollectionRequest entityCollectionRequest,
                                                                                                                                                                   @RequestParam(value="expand",required=false)
                                                                                                                                                                   String... expandFields)
                                                                                                                                         throws DatabaseException

Throws:

DatabaseException

retrieveProtocolMrefRequiredFeatures

@RequestMapping(value="/{id}/requiredFeatures",
                method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ObservableFeatureController.ObservableFeatureResponse> retrieveProtocolMrefRequiredFeatures(@PathVariable
                                                                                                                                                                       Integer id,
                                                                                                                                                                       EntityCollectionRequest entityCollectionRequest,
                                                                                                                                                                       @RequestParam(value="expand",required=false)
                                                                                                                                                                       String... expandFields)
                                                                                                                                             throws DatabaseException

Throws:

DatabaseException

retrieveProtocolMrefRequiredFeaturesJson

@RequestMapping(value="/{id}/requiredFeatures",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ObservableFeatureController.ObservableFeatureResponse> retrieveProtocolMrefRequiredFeaturesJson(@PathVariable
                                                                                                                                                                           Integer id,
                                                                                                                                                                           EntityCollectionRequest entityCollectionRequest,
                                                                                                                                                                           @RequestParam(value="expand",required=false)
                                                                                                                                                                           String... expandFields)
                                                                                                                                                 throws DatabaseException

Throws:

DatabaseException

updateProtocol

@RequestMapping(value="/{id}",
                method=PUT)
@ResponseStatus(value=OK)
public void updateProtocol(@PathVariable
                                                Integer id,
                                                @RequestBody
                                                org.molgenis.controller.ProtocolController.ProtocolRequest protocolRequest)
                    throws DatabaseException

Throws:

DatabaseException

updateProtocolFromForm

@RequestMapping(value="/{id}",
                method=PUT,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.ProtocolController.ProtocolResponse> updateProtocolFromForm(@PathVariable
                                                                                                                                                      Integer id,
                                                                                                                                                      @PathVariable
                                                                                                                                                      String _method,
                                                                                                                                                      @ModelAttribute
                                                                                                                                                      org.molgenis.controller.ProtocolController.ProtocolRequest protocolRequest)
                                                                                                                            throws DatabaseException

Throws:

DatabaseException

updateProtocolPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT")
@ResponseStatus(value=NO_CONTENT)
public void updateProtocolPost(@PathVariable
                                                    Integer id,
                                                    @RequestBody
                                                    org.molgenis.controller.ProtocolController.ProtocolRequest protocolRequest)
                        throws DatabaseException

Throws:

DatabaseException

updateProtocolFromFormPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT",
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseStatus(value=NO_CONTENT)
public void updateProtocolFromFormPost(@PathVariable
                                                            Integer id,
                                                            @ModelAttribute
                                                            org.molgenis.controller.ProtocolController.ProtocolRequest protocolRequest)
                                throws DatabaseException

Throws:

DatabaseException

deleteProtocol

@RequestMapping(value="/{id}",
                method=DELETE)
@ResponseStatus(value=NO_CONTENT)
public void deleteProtocol(@PathVariable
                                                Integer id)
                    throws DatabaseException

Throws:

DatabaseException

deleteProtocolPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=DELETE")
@ResponseStatus(value=NO_CONTENT)
public void deleteProtocolPost(@PathVariable
                                                    Integer id)
                        throws DatabaseException

Throws:

DatabaseException

retrieveProtocolCollection

@RequestMapping(method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProtocolController.ProtocolResponse> retrieveProtocolCollection(EntityCollectionRequest protocolCollectionRequest,
                                                                                                                                           @RequestParam(value="expand",required=false)
                                                                                                                                           String... expandFields)
                                                                                                                 throws DatabaseException

Throws:

DatabaseException

retrieveProtocolCollectionJson

@RequestMapping(method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProtocolController.ProtocolResponse> retrieveProtocolCollectionJson(EntityCollectionRequest protocolCollectionRequest,
                                                                                                                                               @RequestParam(value="expand",required=false)
                                                                                                                                               String... expandFields)
                                                                                                                     throws DatabaseException

Throws:

DatabaseException

retrieveProtocolCollectionPost

@RequestMapping(method=POST,
                params="_method=GET")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProtocolController.ProtocolResponse> retrieveProtocolCollectionPost(@RequestBody
                                                                                                                                               EntityCollectionRequest protocolCollectionRequest,
                                                                                                                                               @RequestParam(value="expand",required=false)
                                                                                                                                               String... expandFields)
                                                                                                                     throws DatabaseException

Throws:

DatabaseException

retrieveProtocolCollectionJsonPost

@RequestMapping(method=POST,
                params={"_method=GET","format=json"},
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.ProtocolController.ProtocolResponse> retrieveProtocolCollectionJsonPost(@RequestBody
                                                                                                                                                   EntityCollectionRequest protocolCollectionRequest,
                                                                                                                                                   @RequestParam(value="expand",required=false)
                                                                                                                                                   String... expandFields)
                                                                                                                         throws DatabaseException

Throws:

DatabaseException

handleEntityNotFoundException

@ExceptionHandler(value=org.molgenis.framework.db.EntityNotFoundException.class)
@ResponseStatus(value=NOT_FOUND)
@ResponseBody
public ErrorMessageResponse handleEntityNotFoundException(EntityNotFoundException e)

handleDatabaseException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleDatabaseException(DatabaseException e)

handleDatabaseAccessException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseAccessException.class)
@ResponseStatus(value=UNAUTHORIZED)
@ResponseBody
public ErrorMessageResponse handleDatabaseAccessException(DatabaseAccessException e)

handleRuntimeException

@ExceptionHandler(value=java.lang.RuntimeException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleRuntimeException(RuntimeException e)