org.molgenis.controller

Class SNPController

java.lang.Object

org.molgenis.controller.SNPController

@Lazy
@Controller
@RequestMapping(value="/api/v1/snp")
public class SNPController
extends Object

Constructor Summary

Constructors

Constructor and Description
SNPController()

Method Summary

Methods

Modifier and Type	Method and Description
void	binder(org.springframework.web.bind.WebDataBinder binder)
org.springframework.http.ResponseEntity<org.molgenis.controller.SNPController.SNPResponse>	createSNP(org.molgenis.controller.SNPController.SNPRequest sNPRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.SNPController.SNPResponse>	createSNPFromForm(org.molgenis.controller.SNPController.SNPRequest sNPRequest)
void	deleteSNP(Integer id)
void	deleteSNPPost(Integer id)
ErrorMessageResponse	handleDatabaseAccessException(DatabaseAccessException e)
ErrorMessageResponse	handleDatabaseException(DatabaseException e)
ErrorMessageResponse	handleEntityNotFoundException(EntityNotFoundException e)
ErrorMessageResponse	handleRuntimeException(RuntimeException e)
org.molgenis.controller.SNPController.SNPResponse	retrieveSNP(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SNPController.SNPResponse>	retrieveSNPCollection(EntityCollectionRequest sNPCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SNPController.SNPResponse>	retrieveSNPCollectionJson(EntityCollectionRequest sNPCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SNPController.SNPResponse>	retrieveSNPCollectionJsonPost(EntityCollectionRequest sNPCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SNPController.SNPResponse>	retrieveSNPCollectionPost(EntityCollectionRequest sNPCollectionRequest, String... expandFields)
org.molgenis.controller.SNPController.SNPResponse	retrieveSNPJson(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.PolymorphismController.PolymorphismResponse>	retrieveSNPMrefPolymorphism(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.PolymorphismController.PolymorphismResponse>	retrieveSNPMrefPolymorphismJson(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse>	retrieveSNPMrefReportsFor(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse>	retrieveSNPMrefReportsForJson(Integer id, EntityCollectionRequest entityCollectionRequest, String... expandFields)
String	retrieveSNPXrefChromosome(Integer id, String... expandFields)
String	retrieveSNPXrefChromosomeJson(Integer id, String... expandFields)
void	updateSNP(Integer id, org.molgenis.controller.SNPController.SNPRequest sNPRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.SNPController.SNPResponse>	updateSNPFromForm(Integer id, String _method, org.molgenis.controller.SNPController.SNPRequest sNPRequest)
void	updateSNPFromFormPost(Integer id, org.molgenis.controller.SNPController.SNPRequest sNPRequest)
void	updateSNPPost(Integer id, org.molgenis.controller.SNPController.SNPRequest sNPRequest)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SNPController

public SNPController()

Method Detail

createSNP

@RequestMapping(method=POST)
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SNPController.SNPResponse> createSNP(@RequestBody
                                                                                                                               org.molgenis.controller.SNPController.SNPRequest sNPRequest)
                                                                                                     throws DatabaseException

Throws:

DatabaseException

createSNPFromForm

@RequestMapping(method=POST,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SNPController.SNPResponse> createSNPFromForm(@ModelAttribute
                                                                                                                                       org.molgenis.controller.SNPController.SNPRequest sNPRequest)
                                                                                                             throws DatabaseException

Throws:

DatabaseException

retrieveSNP

@RequestMapping(value="/{id}",
                method=GET)
@ResponseBody
public org.molgenis.controller.SNPController.SNPResponse retrieveSNP(@PathVariable
                                                                                        Integer id,
                                                                                        @RequestParam(value="expand",required=false)
                                                                                        String... expandFields)
                                                              throws DatabaseException

Throws:

DatabaseException

retrieveSNPJson

@RequestMapping(value="/{id}",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public org.molgenis.controller.SNPController.SNPResponse retrieveSNPJson(@PathVariable
                                                                                            Integer id,
                                                                                            @RequestParam(value="expand",required=false)
                                                                                            String... expandFields)
                                                                  throws DatabaseException

Throws:

DatabaseException

binder

@InitBinder
public void binder(org.springframework.web.bind.WebDataBinder binder)

retrieveSNPXrefChromosome

@RequestMapping(value="/{id}/chromosome",
                method=GET)
public String retrieveSNPXrefChromosome(@PathVariable
                                              Integer id,
                                              @RequestParam(value="expand",required=false)
                                              String... expandFields)
                                 throws DatabaseException

Throws:

DatabaseException

retrieveSNPXrefChromosomeJson

@RequestMapping(value="/{id}/chromosome",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveSNPXrefChromosomeJson(@PathVariable
                                                  Integer id,
                                                  @RequestParam(value="expand",required=false)
                                                  String... expandFields)
                                     throws DatabaseException

Throws:

DatabaseException

retrieveSNPMrefReportsFor

@RequestMapping(value="/{id}/reportsFor",
                method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse> retrieveSNPMrefReportsFor(@PathVariable
                                                                                                                                      Integer id,
                                                                                                                                      EntityCollectionRequest entityCollectionRequest,
                                                                                                                                      @RequestParam(value="expand",required=false)
                                                                                                                                      String... expandFields)
                                                                                                            throws DatabaseException

Throws:

DatabaseException

retrieveSNPMrefReportsForJson

@RequestMapping(value="/{id}/reportsFor",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.MarkerController.MarkerResponse> retrieveSNPMrefReportsForJson(@PathVariable
                                                                                                                                          Integer id,
                                                                                                                                          EntityCollectionRequest entityCollectionRequest,
                                                                                                                                          @RequestParam(value="expand",required=false)
                                                                                                                                          String... expandFields)
                                                                                                                throws DatabaseException

Throws:

DatabaseException

retrieveSNPMrefPolymorphism

@RequestMapping(value="/{id}/polymorphism",
                method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.PolymorphismController.PolymorphismResponse> retrieveSNPMrefPolymorphism(@PathVariable
                                                                                                                                                    Integer id,
                                                                                                                                                    EntityCollectionRequest entityCollectionRequest,
                                                                                                                                                    @RequestParam(value="expand",required=false)
                                                                                                                                                    String... expandFields)
                                                                                                                          throws DatabaseException

Throws:

DatabaseException

retrieveSNPMrefPolymorphismJson

@RequestMapping(value="/{id}/polymorphism",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.PolymorphismController.PolymorphismResponse> retrieveSNPMrefPolymorphismJson(@PathVariable
                                                                                                                                                        Integer id,
                                                                                                                                                        EntityCollectionRequest entityCollectionRequest,
                                                                                                                                                        @RequestParam(value="expand",required=false)
                                                                                                                                                        String... expandFields)
                                                                                                                              throws DatabaseException

Throws:

DatabaseException

updateSNP

@RequestMapping(value="/{id}",
                method=PUT)
@ResponseStatus(value=OK)
public void updateSNP(@PathVariable
                                           Integer id,
                                           @RequestBody
                                           org.molgenis.controller.SNPController.SNPRequest sNPRequest)
               throws DatabaseException

Throws:

DatabaseException

updateSNPFromForm

@RequestMapping(value="/{id}",
                method=PUT,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SNPController.SNPResponse> updateSNPFromForm(@PathVariable
                                                                                                                                       Integer id,
                                                                                                                                       @PathVariable
                                                                                                                                       String _method,
                                                                                                                                       @ModelAttribute
                                                                                                                                       org.molgenis.controller.SNPController.SNPRequest sNPRequest)
                                                                                                             throws DatabaseException

Throws:

DatabaseException

updateSNPPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT")
@ResponseStatus(value=NO_CONTENT)
public void updateSNPPost(@PathVariable
                                               Integer id,
                                               @RequestBody
                                               org.molgenis.controller.SNPController.SNPRequest sNPRequest)
                   throws DatabaseException

Throws:

DatabaseException

updateSNPFromFormPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT",
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseStatus(value=NO_CONTENT)
public void updateSNPFromFormPost(@PathVariable
                                                       Integer id,
                                                       @ModelAttribute
                                                       org.molgenis.controller.SNPController.SNPRequest sNPRequest)
                           throws DatabaseException

Throws:

DatabaseException

deleteSNP

@RequestMapping(value="/{id}",
                method=DELETE)
@ResponseStatus(value=NO_CONTENT)
public void deleteSNP(@PathVariable
                                           Integer id)
               throws DatabaseException

Throws:

DatabaseException

deleteSNPPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=DELETE")
@ResponseStatus(value=NO_CONTENT)
public void deleteSNPPost(@PathVariable
                                               Integer id)
                   throws DatabaseException

Throws:

DatabaseException

retrieveSNPCollection

@RequestMapping(method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SNPController.SNPResponse> retrieveSNPCollection(EntityCollectionRequest sNPCollectionRequest,
                                                                                                                            @RequestParam(value="expand",required=false)
                                                                                                                            String... expandFields)
                                                                                                  throws DatabaseException

Throws:

DatabaseException

retrieveSNPCollectionJson

@RequestMapping(method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SNPController.SNPResponse> retrieveSNPCollectionJson(EntityCollectionRequest sNPCollectionRequest,
                                                                                                                                @RequestParam(value="expand",required=false)
                                                                                                                                String... expandFields)
                                                                                                      throws DatabaseException

Throws:

DatabaseException

retrieveSNPCollectionPost

@RequestMapping(method=POST,
                params="_method=GET")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SNPController.SNPResponse> retrieveSNPCollectionPost(@RequestBody
                                                                                                                                EntityCollectionRequest sNPCollectionRequest,
                                                                                                                                @RequestParam(value="expand",required=false)
                                                                                                                                String... expandFields)
                                                                                                      throws DatabaseException

Throws:

DatabaseException

retrieveSNPCollectionJsonPost

@RequestMapping(method=POST,
                params={"_method=GET","format=json"},
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SNPController.SNPResponse> retrieveSNPCollectionJsonPost(@RequestBody
                                                                                                                                    EntityCollectionRequest sNPCollectionRequest,
                                                                                                                                    @RequestParam(value="expand",required=false)
                                                                                                                                    String... expandFields)
                                                                                                          throws DatabaseException

Throws:

DatabaseException

handleEntityNotFoundException

@ExceptionHandler(value=org.molgenis.framework.db.EntityNotFoundException.class)
@ResponseStatus(value=NOT_FOUND)
@ResponseBody
public ErrorMessageResponse handleEntityNotFoundException(EntityNotFoundException e)

handleDatabaseException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleDatabaseException(DatabaseException e)

handleDatabaseAccessException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseAccessException.class)
@ResponseStatus(value=UNAUTHORIZED)
@ResponseBody
public ErrorMessageResponse handleDatabaseAccessException(DatabaseAccessException e)

handleRuntimeException

@ExceptionHandler(value=java.lang.RuntimeException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleRuntimeException(RuntimeException e)