org.molgenis.controller

Class SampleController

java.lang.Object

org.molgenis.controller.SampleController

@Lazy
@Controller
@RequestMapping(value="/api/v1/sample")
public class SampleController
extends Object

Constructor Summary

Constructors

Constructor and Description
SampleController()

Method Summary

Methods

Modifier and Type	Method and Description
void	binder(org.springframework.web.bind.WebDataBinder binder)
org.springframework.http.ResponseEntity<org.molgenis.controller.SampleController.SampleResponse>	createSample(org.molgenis.controller.SampleController.SampleRequest sampleRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.SampleController.SampleResponse>	createSampleFromForm(org.molgenis.controller.SampleController.SampleRequest sampleRequest)
void	deleteSample(Integer id)
void	deleteSamplePost(Integer id)
ErrorMessageResponse	handleDatabaseAccessException(DatabaseAccessException e)
ErrorMessageResponse	handleDatabaseException(DatabaseException e)
ErrorMessageResponse	handleEntityNotFoundException(EntityNotFoundException e)
ErrorMessageResponse	handleRuntimeException(RuntimeException e)
org.molgenis.controller.SampleController.SampleResponse	retrieveSample(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse>	retrieveSampleCollection(EntityCollectionRequest sampleCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse>	retrieveSampleCollectionJson(EntityCollectionRequest sampleCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse>	retrieveSampleCollectionJsonPost(EntityCollectionRequest sampleCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse>	retrieveSampleCollectionPost(EntityCollectionRequest sampleCollectionRequest, String... expandFields)
org.molgenis.controller.SampleController.SampleResponse	retrieveSampleJson(Integer id, String... expandFields)
String	retrieveSampleXrefIndividual(Integer id, String... expandFields)
String	retrieveSampleXrefIndividualJson(Integer id, String... expandFields)
String	retrieveSampleXrefTissue(Integer id, String... expandFields)
String	retrieveSampleXrefTissueJson(Integer id, String... expandFields)
void	updateSample(Integer id, org.molgenis.controller.SampleController.SampleRequest sampleRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.SampleController.SampleResponse>	updateSampleFromForm(Integer id, String _method, org.molgenis.controller.SampleController.SampleRequest sampleRequest)
void	updateSampleFromFormPost(Integer id, org.molgenis.controller.SampleController.SampleRequest sampleRequest)
void	updateSamplePost(Integer id, org.molgenis.controller.SampleController.SampleRequest sampleRequest)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SampleController

public SampleController()

Method Detail

createSample

@RequestMapping(method=POST)
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SampleController.SampleResponse> createSample(@RequestBody
                                                                                                                                        org.molgenis.controller.SampleController.SampleRequest sampleRequest)
                                                                                                              throws DatabaseException

Throws:

DatabaseException

createSampleFromForm

@RequestMapping(method=POST,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SampleController.SampleResponse> createSampleFromForm(@ModelAttribute
                                                                                                                                                org.molgenis.controller.SampleController.SampleRequest sampleRequest)
                                                                                                                      throws DatabaseException

Throws:

DatabaseException

retrieveSample

@RequestMapping(value="/{id}",
                method=GET)
@ResponseBody
public org.molgenis.controller.SampleController.SampleResponse retrieveSample(@PathVariable
                                                                                                 Integer id,
                                                                                                 @RequestParam(value="expand",required=false)
                                                                                                 String... expandFields)
                                                                       throws DatabaseException

Throws:

DatabaseException

retrieveSampleJson

@RequestMapping(value="/{id}",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public org.molgenis.controller.SampleController.SampleResponse retrieveSampleJson(@PathVariable
                                                                                                     Integer id,
                                                                                                     @RequestParam(value="expand",required=false)
                                                                                                     String... expandFields)
                                                                           throws DatabaseException

Throws:

DatabaseException

binder

@InitBinder
public void binder(org.springframework.web.bind.WebDataBinder binder)

retrieveSampleXrefIndividual

@RequestMapping(value="/{id}/individual",
                method=GET)
public String retrieveSampleXrefIndividual(@PathVariable
                                                 Integer id,
                                                 @RequestParam(value="expand",required=false)
                                                 String... expandFields)
                                    throws DatabaseException

Throws:

DatabaseException

retrieveSampleXrefIndividualJson

@RequestMapping(value="/{id}/individual",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveSampleXrefIndividualJson(@PathVariable
                                                     Integer id,
                                                     @RequestParam(value="expand",required=false)
                                                     String... expandFields)
                                        throws DatabaseException

Throws:

DatabaseException

retrieveSampleXrefTissue

@RequestMapping(value="/{id}/tissue",
                method=GET)
public String retrieveSampleXrefTissue(@PathVariable
                                             Integer id,
                                             @RequestParam(value="expand",required=false)
                                             String... expandFields)
                                throws DatabaseException

Throws:

DatabaseException

retrieveSampleXrefTissueJson

@RequestMapping(value="/{id}/tissue",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveSampleXrefTissueJson(@PathVariable
                                                 Integer id,
                                                 @RequestParam(value="expand",required=false)
                                                 String... expandFields)
                                    throws DatabaseException

Throws:

DatabaseException

updateSample

@RequestMapping(value="/{id}",
                method=PUT)
@ResponseStatus(value=OK)
public void updateSample(@PathVariable
                                              Integer id,
                                              @RequestBody
                                              org.molgenis.controller.SampleController.SampleRequest sampleRequest)
                  throws DatabaseException

Throws:

DatabaseException

updateSampleFromForm

@RequestMapping(value="/{id}",
                method=PUT,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SampleController.SampleResponse> updateSampleFromForm(@PathVariable
                                                                                                                                                Integer id,
                                                                                                                                                @PathVariable
                                                                                                                                                String _method,
                                                                                                                                                @ModelAttribute
                                                                                                                                                org.molgenis.controller.SampleController.SampleRequest sampleRequest)
                                                                                                                      throws DatabaseException

Throws:

DatabaseException

updateSamplePost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT")
@ResponseStatus(value=NO_CONTENT)
public void updateSamplePost(@PathVariable
                                                  Integer id,
                                                  @RequestBody
                                                  org.molgenis.controller.SampleController.SampleRequest sampleRequest)
                      throws DatabaseException

Throws:

DatabaseException

updateSampleFromFormPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT",
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseStatus(value=NO_CONTENT)
public void updateSampleFromFormPost(@PathVariable
                                                          Integer id,
                                                          @ModelAttribute
                                                          org.molgenis.controller.SampleController.SampleRequest sampleRequest)
                              throws DatabaseException

Throws:

DatabaseException

deleteSample

@RequestMapping(value="/{id}",
                method=DELETE)
@ResponseStatus(value=NO_CONTENT)
public void deleteSample(@PathVariable
                                              Integer id)
                  throws DatabaseException

Throws:

DatabaseException

deleteSamplePost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=DELETE")
@ResponseStatus(value=NO_CONTENT)
public void deleteSamplePost(@PathVariable
                                                  Integer id)
                      throws DatabaseException

Throws:

DatabaseException

retrieveSampleCollection

@RequestMapping(method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse> retrieveSampleCollection(EntityCollectionRequest sampleCollectionRequest,
                                                                                                                                     @RequestParam(value="expand",required=false)
                                                                                                                                     String... expandFields)
                                                                                                           throws DatabaseException

Throws:

DatabaseException

retrieveSampleCollectionJson

@RequestMapping(method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse> retrieveSampleCollectionJson(EntityCollectionRequest sampleCollectionRequest,
                                                                                                                                         @RequestParam(value="expand",required=false)
                                                                                                                                         String... expandFields)
                                                                                                               throws DatabaseException

Throws:

DatabaseException

retrieveSampleCollectionPost

@RequestMapping(method=POST,
                params="_method=GET")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse> retrieveSampleCollectionPost(@RequestBody
                                                                                                                                         EntityCollectionRequest sampleCollectionRequest,
                                                                                                                                         @RequestParam(value="expand",required=false)
                                                                                                                                         String... expandFields)
                                                                                                               throws DatabaseException

Throws:

DatabaseException

retrieveSampleCollectionJsonPost

@RequestMapping(method=POST,
                params={"_method=GET","format=json"},
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SampleController.SampleResponse> retrieveSampleCollectionJsonPost(@RequestBody
                                                                                                                                             EntityCollectionRequest sampleCollectionRequest,
                                                                                                                                             @RequestParam(value="expand",required=false)
                                                                                                                                             String... expandFields)
                                                                                                                   throws DatabaseException

Throws:

DatabaseException

handleEntityNotFoundException

@ExceptionHandler(value=org.molgenis.framework.db.EntityNotFoundException.class)
@ResponseStatus(value=NOT_FOUND)
@ResponseBody
public ErrorMessageResponse handleEntityNotFoundException(EntityNotFoundException e)

handleDatabaseException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleDatabaseException(DatabaseException e)

handleDatabaseAccessException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseAccessException.class)
@ResponseStatus(value=UNAUTHORIZED)
@ResponseBody
public ErrorMessageResponse handleDatabaseAccessException(DatabaseAccessException e)

handleRuntimeException

@ExceptionHandler(value=java.lang.RuntimeException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleRuntimeException(RuntimeException e)