org.molgenis.controller

Class SpotController

java.lang.Object

org.molgenis.controller.SpotController

@Lazy
@Controller
@RequestMapping(value="/api/v1/spot")
public class SpotController
extends Object

Constructor Summary

Constructors

Constructor and Description
SpotController()

Method Summary

Methods

Modifier and Type	Method and Description
void	binder(org.springframework.web.bind.WebDataBinder binder)
org.springframework.http.ResponseEntity<org.molgenis.controller.SpotController.SpotResponse>	createSpot(org.molgenis.controller.SpotController.SpotRequest spotRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.SpotController.SpotResponse>	createSpotFromForm(org.molgenis.controller.SpotController.SpotRequest spotRequest)
void	deleteSpot(Integer id)
void	deleteSpotPost(Integer id)
ErrorMessageResponse	handleDatabaseAccessException(DatabaseAccessException e)
ErrorMessageResponse	handleDatabaseException(DatabaseException e)
ErrorMessageResponse	handleEntityNotFoundException(EntityNotFoundException e)
ErrorMessageResponse	handleRuntimeException(RuntimeException e)
org.molgenis.controller.SpotController.SpotResponse	retrieveSpot(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SpotController.SpotResponse>	retrieveSpotCollection(EntityCollectionRequest spotCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SpotController.SpotResponse>	retrieveSpotCollectionJson(EntityCollectionRequest spotCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SpotController.SpotResponse>	retrieveSpotCollectionJsonPost(EntityCollectionRequest spotCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.SpotController.SpotResponse>	retrieveSpotCollectionPost(EntityCollectionRequest spotCollectionRequest, String... expandFields)
org.molgenis.controller.SpotController.SpotResponse	retrieveSpotJson(Integer id, String... expandFields)
String	retrieveSpotXrefChromosome(Integer id, String... expandFields)
String	retrieveSpotXrefChromosomeJson(Integer id, String... expandFields)
String	retrieveSpotXrefProbeSet(Integer id, String... expandFields)
String	retrieveSpotXrefProbeSetJson(Integer id, String... expandFields)
String	retrieveSpotXrefReportsFor(Integer id, String... expandFields)
String	retrieveSpotXrefReportsForJson(Integer id, String... expandFields)
void	updateSpot(Integer id, org.molgenis.controller.SpotController.SpotRequest spotRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.SpotController.SpotResponse>	updateSpotFromForm(Integer id, String _method, org.molgenis.controller.SpotController.SpotRequest spotRequest)
void	updateSpotFromFormPost(Integer id, org.molgenis.controller.SpotController.SpotRequest spotRequest)
void	updateSpotPost(Integer id, org.molgenis.controller.SpotController.SpotRequest spotRequest)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SpotController

public SpotController()

Method Detail

createSpot

@RequestMapping(method=POST)
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SpotController.SpotResponse> createSpot(@RequestBody
                                                                                                                                  org.molgenis.controller.SpotController.SpotRequest spotRequest)
                                                                                                        throws DatabaseException

Throws:

DatabaseException

createSpotFromForm

@RequestMapping(method=POST,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SpotController.SpotResponse> createSpotFromForm(@ModelAttribute
                                                                                                                                          org.molgenis.controller.SpotController.SpotRequest spotRequest)
                                                                                                                throws DatabaseException

Throws:

DatabaseException

retrieveSpot

@RequestMapping(value="/{id}",
                method=GET)
@ResponseBody
public org.molgenis.controller.SpotController.SpotResponse retrieveSpot(@PathVariable
                                                                                           Integer id,
                                                                                           @RequestParam(value="expand",required=false)
                                                                                           String... expandFields)
                                                                 throws DatabaseException

Throws:

DatabaseException

retrieveSpotJson

@RequestMapping(value="/{id}",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public org.molgenis.controller.SpotController.SpotResponse retrieveSpotJson(@PathVariable
                                                                                               Integer id,
                                                                                               @RequestParam(value="expand",required=false)
                                                                                               String... expandFields)
                                                                     throws DatabaseException

Throws:

DatabaseException

binder

@InitBinder
public void binder(org.springframework.web.bind.WebDataBinder binder)

retrieveSpotXrefChromosome

@RequestMapping(value="/{id}/chromosome",
                method=GET)
public String retrieveSpotXrefChromosome(@PathVariable
                                               Integer id,
                                               @RequestParam(value="expand",required=false)
                                               String... expandFields)
                                  throws DatabaseException

Throws:

DatabaseException

retrieveSpotXrefChromosomeJson

@RequestMapping(value="/{id}/chromosome",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveSpotXrefChromosomeJson(@PathVariable
                                                   Integer id,
                                                   @RequestParam(value="expand",required=false)
                                                   String... expandFields)
                                      throws DatabaseException

Throws:

DatabaseException

retrieveSpotXrefProbeSet

@RequestMapping(value="/{id}/probeSet",
                method=GET)
public String retrieveSpotXrefProbeSet(@PathVariable
                                             Integer id,
                                             @RequestParam(value="expand",required=false)
                                             String... expandFields)
                                throws DatabaseException

Throws:

DatabaseException

retrieveSpotXrefProbeSetJson

@RequestMapping(value="/{id}/probeSet",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveSpotXrefProbeSetJson(@PathVariable
                                                 Integer id,
                                                 @RequestParam(value="expand",required=false)
                                                 String... expandFields)
                                    throws DatabaseException

Throws:

DatabaseException

retrieveSpotXrefReportsFor

@RequestMapping(value="/{id}/reportsFor",
                method=GET)
public String retrieveSpotXrefReportsFor(@PathVariable
                                               Integer id,
                                               @RequestParam(value="expand",required=false)
                                               String... expandFields)
                                  throws DatabaseException

Throws:

DatabaseException

retrieveSpotXrefReportsForJson

@RequestMapping(value="/{id}/reportsFor",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveSpotXrefReportsForJson(@PathVariable
                                                   Integer id,
                                                   @RequestParam(value="expand",required=false)
                                                   String... expandFields)
                                      throws DatabaseException

Throws:

DatabaseException

updateSpot

@RequestMapping(value="/{id}",
                method=PUT)
@ResponseStatus(value=OK)
public void updateSpot(@PathVariable
                                            Integer id,
                                            @RequestBody
                                            org.molgenis.controller.SpotController.SpotRequest spotRequest)
                throws DatabaseException

Throws:

DatabaseException

updateSpotFromForm

@RequestMapping(value="/{id}",
                method=PUT,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.SpotController.SpotResponse> updateSpotFromForm(@PathVariable
                                                                                                                                          Integer id,
                                                                                                                                          @PathVariable
                                                                                                                                          String _method,
                                                                                                                                          @ModelAttribute
                                                                                                                                          org.molgenis.controller.SpotController.SpotRequest spotRequest)
                                                                                                                throws DatabaseException

Throws:

DatabaseException

updateSpotPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT")
@ResponseStatus(value=NO_CONTENT)
public void updateSpotPost(@PathVariable
                                                Integer id,
                                                @RequestBody
                                                org.molgenis.controller.SpotController.SpotRequest spotRequest)
                    throws DatabaseException

Throws:

DatabaseException

updateSpotFromFormPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT",
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseStatus(value=NO_CONTENT)
public void updateSpotFromFormPost(@PathVariable
                                                        Integer id,
                                                        @ModelAttribute
                                                        org.molgenis.controller.SpotController.SpotRequest spotRequest)
                            throws DatabaseException

Throws:

DatabaseException

deleteSpot

@RequestMapping(value="/{id}",
                method=DELETE)
@ResponseStatus(value=NO_CONTENT)
public void deleteSpot(@PathVariable
                                            Integer id)
                throws DatabaseException

Throws:

DatabaseException

deleteSpotPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=DELETE")
@ResponseStatus(value=NO_CONTENT)
public void deleteSpotPost(@PathVariable
                                                Integer id)
                    throws DatabaseException

Throws:

DatabaseException

retrieveSpotCollection

@RequestMapping(method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SpotController.SpotResponse> retrieveSpotCollection(EntityCollectionRequest spotCollectionRequest,
                                                                                                                               @RequestParam(value="expand",required=false)
                                                                                                                               String... expandFields)
                                                                                                     throws DatabaseException

Throws:

DatabaseException

retrieveSpotCollectionJson

@RequestMapping(method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SpotController.SpotResponse> retrieveSpotCollectionJson(EntityCollectionRequest spotCollectionRequest,
                                                                                                                                   @RequestParam(value="expand",required=false)
                                                                                                                                   String... expandFields)
                                                                                                         throws DatabaseException

Throws:

DatabaseException

retrieveSpotCollectionPost

@RequestMapping(method=POST,
                params="_method=GET")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SpotController.SpotResponse> retrieveSpotCollectionPost(@RequestBody
                                                                                                                                   EntityCollectionRequest spotCollectionRequest,
                                                                                                                                   @RequestParam(value="expand",required=false)
                                                                                                                                   String... expandFields)
                                                                                                         throws DatabaseException

Throws:

DatabaseException

retrieveSpotCollectionJsonPost

@RequestMapping(method=POST,
                params={"_method=GET","format=json"},
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.SpotController.SpotResponse> retrieveSpotCollectionJsonPost(@RequestBody
                                                                                                                                       EntityCollectionRequest spotCollectionRequest,
                                                                                                                                       @RequestParam(value="expand",required=false)
                                                                                                                                       String... expandFields)
                                                                                                             throws DatabaseException

Throws:

DatabaseException

handleEntityNotFoundException

@ExceptionHandler(value=org.molgenis.framework.db.EntityNotFoundException.class)
@ResponseStatus(value=NOT_FOUND)
@ResponseBody
public ErrorMessageResponse handleEntityNotFoundException(EntityNotFoundException e)

handleDatabaseException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleDatabaseException(DatabaseException e)

handleDatabaseAccessException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseAccessException.class)
@ResponseStatus(value=UNAUTHORIZED)
@ResponseBody
public ErrorMessageResponse handleDatabaseAccessException(DatabaseAccessException e)

handleRuntimeException

@ExceptionHandler(value=java.lang.RuntimeException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleRuntimeException(RuntimeException e)