org.molgenis.controller

Class TranscriptController

java.lang.Object

org.molgenis.controller.TranscriptController

@Lazy
@Controller
@RequestMapping(value="/api/v1/transcript")
public class TranscriptController
extends Object

Constructor Summary

Constructors

Constructor and Description
TranscriptController()

Method Summary

Methods

Modifier and Type	Method and Description
void	binder(org.springframework.web.bind.WebDataBinder binder)
org.springframework.http.ResponseEntity<org.molgenis.controller.TranscriptController.TranscriptResponse>	createTranscript(org.molgenis.controller.TranscriptController.TranscriptRequest transcriptRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.TranscriptController.TranscriptResponse>	createTranscriptFromForm(org.molgenis.controller.TranscriptController.TranscriptRequest transcriptRequest)
void	deleteTranscript(Integer id)
void	deleteTranscriptPost(Integer id)
ErrorMessageResponse	handleDatabaseAccessException(DatabaseAccessException e)
ErrorMessageResponse	handleDatabaseException(DatabaseException e)
ErrorMessageResponse	handleEntityNotFoundException(EntityNotFoundException e)
ErrorMessageResponse	handleRuntimeException(RuntimeException e)
org.molgenis.controller.TranscriptController.TranscriptResponse	retrieveTranscript(Integer id, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.TranscriptController.TranscriptResponse>	retrieveTranscriptCollection(EntityCollectionRequest transcriptCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.TranscriptController.TranscriptResponse>	retrieveTranscriptCollectionJson(EntityCollectionRequest transcriptCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.TranscriptController.TranscriptResponse>	retrieveTranscriptCollectionJsonPost(EntityCollectionRequest transcriptCollectionRequest, String... expandFields)
EntityCollectionResponse<org.molgenis.controller.TranscriptController.TranscriptResponse>	retrieveTranscriptCollectionPost(EntityCollectionRequest transcriptCollectionRequest, String... expandFields)
org.molgenis.controller.TranscriptController.TranscriptResponse	retrieveTranscriptJson(Integer id, String... expandFields)
String	retrieveTranscriptXrefGene(Integer id, String... expandFields)
String	retrieveTranscriptXrefGeneJson(Integer id, String... expandFields)
void	updateTranscript(Integer id, org.molgenis.controller.TranscriptController.TranscriptRequest transcriptRequest)
org.springframework.http.ResponseEntity<org.molgenis.controller.TranscriptController.TranscriptResponse>	updateTranscriptFromForm(Integer id, String _method, org.molgenis.controller.TranscriptController.TranscriptRequest transcriptRequest)
void	updateTranscriptFromFormPost(Integer id, org.molgenis.controller.TranscriptController.TranscriptRequest transcriptRequest)
void	updateTranscriptPost(Integer id, org.molgenis.controller.TranscriptController.TranscriptRequest transcriptRequest)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TranscriptController

public TranscriptController()

Method Detail

createTranscript

@RequestMapping(method=POST)
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.TranscriptController.TranscriptResponse> createTranscript(@RequestBody
                                                                                                                                                    org.molgenis.controller.TranscriptController.TranscriptRequest transcriptRequest)
                                                                                                                          throws DatabaseException

Throws:

DatabaseException

createTranscriptFromForm

@RequestMapping(method=POST,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.TranscriptController.TranscriptResponse> createTranscriptFromForm(@ModelAttribute
                                                                                                                                                            org.molgenis.controller.TranscriptController.TranscriptRequest transcriptRequest)
                                                                                                                                  throws DatabaseException

Throws:

DatabaseException

retrieveTranscript

@RequestMapping(value="/{id}",
                method=GET)
@ResponseBody
public org.molgenis.controller.TranscriptController.TranscriptResponse retrieveTranscript(@PathVariable
                                                                                                             Integer id,
                                                                                                             @RequestParam(value="expand",required=false)
                                                                                                             String... expandFields)
                                                                                   throws DatabaseException

Throws:

DatabaseException

retrieveTranscriptJson

@RequestMapping(value="/{id}",
                method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public org.molgenis.controller.TranscriptController.TranscriptResponse retrieveTranscriptJson(@PathVariable
                                                                                                                 Integer id,
                                                                                                                 @RequestParam(value="expand",required=false)
                                                                                                                 String... expandFields)
                                                                                       throws DatabaseException

Throws:

DatabaseException

binder

@InitBinder
public void binder(org.springframework.web.bind.WebDataBinder binder)

retrieveTranscriptXrefGene

@RequestMapping(value="/{id}/gene",
                method=GET)
public String retrieveTranscriptXrefGene(@PathVariable
                                               Integer id,
                                               @RequestParam(value="expand",required=false)
                                               String... expandFields)
                                  throws DatabaseException

Throws:

DatabaseException

retrieveTranscriptXrefGeneJson

@RequestMapping(value="/{id}/gene",
                method=GET,
                params="format=json",
                produces="application/json")
public String retrieveTranscriptXrefGeneJson(@PathVariable
                                                   Integer id,
                                                   @RequestParam(value="expand",required=false)
                                                   String... expandFields)
                                      throws DatabaseException

Throws:

DatabaseException

updateTranscript

@RequestMapping(value="/{id}",
                method=PUT)
@ResponseStatus(value=OK)
public void updateTranscript(@PathVariable
                                                  Integer id,
                                                  @RequestBody
                                                  org.molgenis.controller.TranscriptController.TranscriptRequest transcriptRequest)
                      throws DatabaseException

Throws:

DatabaseException

updateTranscriptFromForm

@RequestMapping(value="/{id}",
                method=PUT,
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseBody
public org.springframework.http.ResponseEntity<org.molgenis.controller.TranscriptController.TranscriptResponse> updateTranscriptFromForm(@PathVariable
                                                                                                                                                            Integer id,
                                                                                                                                                            @PathVariable
                                                                                                                                                            String _method,
                                                                                                                                                            @ModelAttribute
                                                                                                                                                            org.molgenis.controller.TranscriptController.TranscriptRequest transcriptRequest)
                                                                                                                                  throws DatabaseException

Throws:

DatabaseException

updateTranscriptPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT")
@ResponseStatus(value=NO_CONTENT)
public void updateTranscriptPost(@PathVariable
                                                      Integer id,
                                                      @RequestBody
                                                      org.molgenis.controller.TranscriptController.TranscriptRequest transcriptRequest)
                          throws DatabaseException

Throws:

DatabaseException

updateTranscriptFromFormPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=PUT",
                headers="Content-Type=application/x-www-form-urlencoded")
@ResponseStatus(value=NO_CONTENT)
public void updateTranscriptFromFormPost(@PathVariable
                                                              Integer id,
                                                              @ModelAttribute
                                                              org.molgenis.controller.TranscriptController.TranscriptRequest transcriptRequest)
                                  throws DatabaseException

Throws:

DatabaseException

deleteTranscript

@RequestMapping(value="/{id}",
                method=DELETE)
@ResponseStatus(value=NO_CONTENT)
public void deleteTranscript(@PathVariable
                                                  Integer id)
                      throws DatabaseException

Throws:

DatabaseException

deleteTranscriptPost

@RequestMapping(value="/{id}",
                method=POST,
                params="_method=DELETE")
@ResponseStatus(value=NO_CONTENT)
public void deleteTranscriptPost(@PathVariable
                                                      Integer id)
                          throws DatabaseException

Throws:

DatabaseException

retrieveTranscriptCollection

@RequestMapping(method=GET)
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.TranscriptController.TranscriptResponse> retrieveTranscriptCollection(EntityCollectionRequest transcriptCollectionRequest,
                                                                                                                                                 @RequestParam(value="expand",required=false)
                                                                                                                                                 String... expandFields)
                                                                                                                       throws DatabaseException

Throws:

DatabaseException

retrieveTranscriptCollectionJson

@RequestMapping(method=GET,
                params="format=json",
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.TranscriptController.TranscriptResponse> retrieveTranscriptCollectionJson(EntityCollectionRequest transcriptCollectionRequest,
                                                                                                                                                     @RequestParam(value="expand",required=false)
                                                                                                                                                     String... expandFields)
                                                                                                                           throws DatabaseException

Throws:

DatabaseException

retrieveTranscriptCollectionPost

@RequestMapping(method=POST,
                params="_method=GET")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.TranscriptController.TranscriptResponse> retrieveTranscriptCollectionPost(@RequestBody
                                                                                                                                                     EntityCollectionRequest transcriptCollectionRequest,
                                                                                                                                                     @RequestParam(value="expand",required=false)
                                                                                                                                                     String... expandFields)
                                                                                                                           throws DatabaseException

Throws:

DatabaseException

retrieveTranscriptCollectionJsonPost

@RequestMapping(method=POST,
                params={"_method=GET","format=json"},
                produces="application/json")
@ResponseBody
public EntityCollectionResponse<org.molgenis.controller.TranscriptController.TranscriptResponse> retrieveTranscriptCollectionJsonPost(@RequestBody
                                                                                                                                                         EntityCollectionRequest transcriptCollectionRequest,
                                                                                                                                                         @RequestParam(value="expand",required=false)
                                                                                                                                                         String... expandFields)
                                                                                                                               throws DatabaseException

Throws:

DatabaseException

handleEntityNotFoundException

@ExceptionHandler(value=org.molgenis.framework.db.EntityNotFoundException.class)
@ResponseStatus(value=NOT_FOUND)
@ResponseBody
public ErrorMessageResponse handleEntityNotFoundException(EntityNotFoundException e)

handleDatabaseException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleDatabaseException(DatabaseException e)

handleDatabaseAccessException

@ExceptionHandler(value=org.molgenis.framework.db.DatabaseAccessException.class)
@ResponseStatus(value=UNAUTHORIZED)
@ResponseBody
public ErrorMessageResponse handleDatabaseAccessException(DatabaseAccessException e)

handleRuntimeException

@ExceptionHandler(value=java.lang.RuntimeException.class)
@ResponseStatus(value=INTERNAL_SERVER_ERROR)
@ResponseBody
public ErrorMessageResponse handleRuntimeException(RuntimeException e)