org.molgenis.gaf

Class GafListValidator

java.lang.Object

org.molgenis.gaf.GafListValidator

@Component
public class GafListValidator
extends Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	GafListValidator.GafListValidationError
static class	GafListValidator.GafListValidationReport

Field Summary

Fields

Modifier and Type	Field and Description
static String	COL_ARRAY_FILE
static String	COL_ARRAY_ID
static String	COL_BARCODE
static String	COL_BARCODE_MENU
static String	COL_BARCODE_TYPE
static String	COL_CAPTURING_KIT
static String	COL_COMMENTS
static String	COL_CONTACT
static String	COL_DATA_SHIPPED_BY
static String	COL_DATA_SHIPPED_DATE
static String	COL_DATA_SHIPPED_TO
static String	COL_EXTERNAL_SAMPLE_ID
static String	COL_FLOWCELL
static String	COL_GAF_QC_DATE
static String	COL_GAF_QC_NAME
static String	COL_GAF_QC_STATUS
static String	COL_GCC_ANALYSIS
static String	COL_GCC_QC_DATE
static String	COL_GCC_QC_NAME
static String	COL_GCC_QC_STATUS
static String	COL_INTERNAL_SAMPLE_ID
static String	COL_LAB_STATUS_COMMENTS
static String	COL_LAB_STATUS_PHASE
static String	COL_LANE
static String	COL_LAST_UP_DATE
static String	COL_PREP_KIT
static String	COL_PROJECT
static String	COL_RUN
static String	COL_SEQ_TYPE
static String	COL_SEQUENCER
static String	COL_SEQUENCING_START_DATE
static String	COL_TARGET_DATE_SHIPMENT
static String	COL_VALIDATION_LOG

Constructor Summary

Constructors

Constructor and Description
GafListValidator()

Method Summary

Methods

Modifier and Type	Method and Description
GafListValidator.GafListValidationReport	validate(Repository repository)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

COL_INTERNAL_SAMPLE_ID

public static final String COL_INTERNAL_SAMPLE_ID

COL_EXTERNAL_SAMPLE_ID

public static final String COL_EXTERNAL_SAMPLE_ID

COL_PROJECT

public static final String COL_PROJECT

COL_SEQUENCER

public static final String COL_SEQUENCER

COL_CONTACT

public static final String COL_CONTACT

COL_VALIDATION_LOG

public static final String COL_VALIDATION_LOG

COL_LAB_STATUS_COMMENTS

public static final String COL_LAB_STATUS_COMMENTS

COL_LAB_STATUS_PHASE

public static final String COL_LAB_STATUS_PHASE

COL_LAST_UP_DATE

public static final String COL_LAST_UP_DATE

COL_SEQUENCING_START_DATE

public static final String COL_SEQUENCING_START_DATE

COL_RUN

public static final String COL_RUN

COL_FLOWCELL

public static final String COL_FLOWCELL

COL_LANE

public static final String COL_LANE

COL_BARCODE_MENU

public static final String COL_BARCODE_MENU

COL_SEQ_TYPE

public static final String COL_SEQ_TYPE

COL_PREP_KIT

public static final String COL_PREP_KIT

COL_CAPTURING_KIT

public static final String COL_CAPTURING_KIT

COL_ARRAY_FILE

public static final String COL_ARRAY_FILE

COL_ARRAY_ID

public static final String COL_ARRAY_ID

COL_GAF_QC_NAME

public static final String COL_GAF_QC_NAME

COL_GAF_QC_DATE

public static final String COL_GAF_QC_DATE

COL_GAF_QC_STATUS

public static final String COL_GAF_QC_STATUS

COL_GCC_ANALYSIS

public static final String COL_GCC_ANALYSIS

COL_GCC_QC_NAME

public static final String COL_GCC_QC_NAME

COL_GCC_QC_DATE

public static final String COL_GCC_QC_DATE

COL_GCC_QC_STATUS

public static final String COL_GCC_QC_STATUS

COL_TARGET_DATE_SHIPMENT

public static final String COL_TARGET_DATE_SHIPMENT

COL_DATA_SHIPPED_DATE

public static final String COL_DATA_SHIPPED_DATE

COL_DATA_SHIPPED_TO

public static final String COL_DATA_SHIPPED_TO

COL_DATA_SHIPPED_BY

public static final String COL_DATA_SHIPPED_BY

COL_COMMENTS

public static final String COL_COMMENTS

COL_BARCODE

public static final String COL_BARCODE

COL_BARCODE_TYPE

public static final String COL_BARCODE_TYPE

Constructor Detail

GafListValidator

public GafListValidator()

Method Detail

validate

public GafListValidator.GafListValidationReport validate(Repository repository)
                                                  throws IOException

Throws:

IOException