org.molgenis.gaf

Class GafListFileRepository

java.lang.Object

org.molgenis.data.support.AbstractRepository

org.molgenis.data.csv.CsvRepository

org.molgenis.gaf.GafListFileRepository

All Implemented Interfaces:

java.io.Closeable, java.lang.AutoCloseable, java.lang.Iterable<Entity>, Repository

public class GafListFileRepository
extends CsvRepository

Google spreadsheet repository that only exposes valid GAF list runs

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	GAFLIST_ENTITYNAME

Fields inherited from class org.molgenis.data.csv.CsvRepository

BASE_URL

Constructor Summary

Constructors

Constructor and Description
GafListFileRepository(java.io.File tmpFile, java.util.List<CellProcessor> cellProcessors, java.lang.Character separator, GafListValidationReport report)

Method Summary

Methods

Modifier and Type	Method and Description
java.util.Iterator<Entity>	iterator()

Methods inherited from class org.molgenis.data.csv.CsvRepository

addCellProcessor, close, getEntityMetaData

Methods inherited from class org.molgenis.data.support.AbstractRepository

getName, getUrl, iterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

GAFLIST_ENTITYNAME

public static final java.lang.String GAFLIST_ENTITYNAME

See Also:

Constant Field Values

Constructor Detail

GafListFileRepository

public GafListFileRepository(java.io.File tmpFile,
                     @Nullable
                     java.util.List<CellProcessor> cellProcessors,
                     java.lang.Character separator,
                     GafListValidationReport report)
                      throws java.io.IOException

Throws:

java.io.IOException

Method Detail

iterator

public java.util.Iterator<Entity> iterator()

Specified by:

iterator in interface java.lang.Iterable<Entity>

Overrides:

iterator in class CsvRepository