org.molgenis.tools.gids.convertor

Class SampleConverter

java.lang.Object

org.molgenis.tools.gids.convertor.SampleConverter

public class SampleConverter
extends Object

Constructor Summary

Constructors

Constructor and Description
SampleConverter()

Method Summary

Modifier and Type	Method and Description
boolean	checkIfDouble(String sample)
void	convert(InputStream in, OutputStream out, String outputdir, String projectName)
String	emptySample()
void	mkmetadataExcelFile(ArrayList<String> listOfEntity)
void	mkMetadataFileDataSet(WritableFactory writableFactoryMD, String sheetName)
void	mkMetadataFileObservableFeature(WritableFactory writableFactoryMD, String sheetName)
void	mkMetadataFileProtocol(WritableFactory writableFactoryMD, String sheetName)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SampleConverter

public SampleConverter()

Method Detail

convert

public void convert(InputStream in,
                    OutputStream out,
                    String outputdir,
                    String projectName)
             throws IOException,
                    MolgenisInvalidFormatException

Throws:

IOException

MolgenisInvalidFormatException

checkIfDouble

public boolean checkIfDouble(String sample)

emptySample

public String emptySample()

mkMetadataFileProtocol

public void mkMetadataFileProtocol(WritableFactory writableFactoryMD,
                                   String sheetName)
                            throws IOException

Throws:

IOException

mkMetadataFileObservableFeature

public void mkMetadataFileObservableFeature(WritableFactory writableFactoryMD,
                                            String sheetName)
                                     throws IOException

Throws:

IOException

mkMetadataFileDataSet

public void mkMetadataFileDataSet(WritableFactory writableFactoryMD,
                                  String sheetName)
                           throws IOException

Throws:

IOException

mkmetadataExcelFile

public void mkmetadataExcelFile(ArrayList<String> listOfEntity)
                         throws IOException

Throws:

IOException