org.molgenis.gaf

Class GafListFileRepository

java.lang.Object

org.molgenis.data.support.AbstractRepository

org.molgenis.data.csv.CsvRepository

org.molgenis.gaf.GafListFileRepository

All Implemented Interfaces:

Closeable, AutoCloseable, Iterable<Entity>, Repository

public class GafListFileRepository
extends CsvRepository

Google spreadsheet repository that only exposes valid GAF list runs

Field Summary

Fields

Modifier and Type	Field and Description
static String	GAFLIST_ENTITYNAME

Constructor Summary

Constructors

Constructor and Description
GafListFileRepository(File tmpFile, List<CellProcessor> cellProcessors, Character separator, GafListValidationReport report)

Method Summary

Modifier and Type	Method and Description
Iterator<Entity>	iterator()

Methods inherited from class org.molgenis.data.csv.CsvRepository

addCellProcessor, count, getCapabilities, getEntityMetaData

Methods inherited from class org.molgenis.data.support.AbstractRepository

add, add, aggregate, clearCache, close, count, delete, delete, deleteAll, deleteById, deleteById, findAll, findAll, findOne, findOne, flush, getName, query, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Field Detail

GAFLIST_ENTITYNAME

public static final String GAFLIST_ENTITYNAME

See Also:

Constant Field Values

Constructor Detail

GafListFileRepository

public GafListFileRepository(File tmpFile,
                             @Nullable
                             List<CellProcessor> cellProcessors,
                             Character separator,
                             GafListValidationReport report)
                      throws IOException

Throws:

IOException

Method Detail

iterator

public Iterator<Entity> iterator()

Specified by:

iterator in interface Iterable<Entity>

Overrides:

iterator in class CsvRepository