A B C D E F G H I L M O P R S T U V X Y

A

AbstractChart - Class in org.molgenis.charts

Base class for the different Chart types

AbstractChart() - Constructor for class org.molgenis.charts.AbstractChart

AbstractChart.MolgenisChartType - Enum in org.molgenis.charts

AbstractChartVisualizationService - Class in org.molgenis.charts

AbstractChartVisualizationService(List<AbstractChart.MolgenisChartType>) - Constructor for class org.molgenis.charts.AbstractChartVisualizationService

addBoxPlotSerie(BoxPlotSerie) - Method in class org.molgenis.charts.BoxPlotChart

addData(Double[]) - Method in class org.molgenis.charts.data.BoxPlotSerie

addData(XYData) - Method in class org.molgenis.charts.data.XYDataSerie

addData(List<XYData>) - Method in class org.molgenis.charts.data.XYDataSerie

addSeries(List<Series>) - Method in class org.molgenis.charts.highcharts.basic.Options

addxAxis(XAxis) - Method in class org.molgenis.charts.highcharts.basic.Options

addXYDataSerie(XYDataSerie) - Method in class org.molgenis.charts.BoxPlotChart

addyAxis(YAxis) - Method in class org.molgenis.charts.highcharts.basic.Options

annotateHeatMap(HeatMapChart) - Method in class org.molgenis.charts.svg.SVGEditor

Can annotate SVG heatmap.plus charts made by R.

Axis - Class in org.molgenis.charts.highcharts.basic

Axis() - Constructor for class org.molgenis.charts.highcharts.basic.Axis

AxisAlign - Enum in org.molgenis.charts.highcharts.basic

AxisTitle - Class in org.molgenis.charts.highcharts.basic

AxisTitle() - Constructor for class org.molgenis.charts.highcharts.basic.AxisTitle

AxisType - Enum in org.molgenis.charts.highcharts.basic

B

BasicChart - Class in org.molgenis.charts.highcharts.basic

BasicChart() - Constructor for class org.molgenis.charts.highcharts.basic.BasicChart

BoxPlotCalcUtil - Class in org.molgenis.charts.calculations

BoxPlotCalcUtil() - Constructor for class org.molgenis.charts.calculations.BoxPlotCalcUtil

BoxPlotChart - Class in org.molgenis.charts

A Molgenis Box Plot Chart

BoxPlotChart() - Constructor for class org.molgenis.charts.BoxPlotChart

BoxPlotChartRequest - Class in org.molgenis.charts.requests

BoxPlotChartRequest() - Constructor for class org.molgenis.charts.requests.BoxPlotChartRequest

BoxPlotSerie - Class in org.molgenis.charts.data

BoxPlotSerie() - Constructor for class org.molgenis.charts.data.BoxPlotSerie

C

calcBoxPlotValues(List<Double>) - Static method in class org.molgenis.charts.calculations.BoxPlotCalcUtil

calculates the 5 values needed to create a box plot and returns them in an 5 item sized array.

Chart - Class in org.molgenis.charts.highcharts.chart

Chart() - Constructor for class org.molgenis.charts.highcharts.chart.Chart

ChartAlign - Enum in org.molgenis.charts.highcharts.basic

ChartConstructorType - Enum in org.molgenis.charts.highcharts.basic

ChartController - Class in org.molgenis.charts

ChartController(ChartDataService, ChartVisualizationServiceFactory, FileStore) - Constructor for class org.molgenis.charts.ChartController

ChartDataService - Interface in org.molgenis.charts

Retrieves chart data for rendering

ChartDataServiceImpl - Class in org.molgenis.charts.data

ChartDataServiceImpl(DataService) - Constructor for class org.molgenis.charts.data.ChartDataServiceImpl

ChartRequest - Class in org.molgenis.charts.requests

ChartRequest() - Constructor for class org.molgenis.charts.requests.ChartRequest

ChartTitle - Class in org.molgenis.charts.highcharts.basic

ChartTitle() - Constructor for class org.molgenis.charts.highcharts.basic.ChartTitle

ChartType - Enum in org.molgenis.charts.highcharts.basic

ChartVisualizationService - Interface in org.molgenis.charts

Renders a chart.

ChartVisualizationServiceFactory - Class in org.molgenis.charts

Here all the visualizationservices are registered.

ChartVisualizationServiceFactory(RChartService, HighchartService) - Constructor for class org.molgenis.charts.ChartVisualizationServiceFactory

convertDateTimeToMilliseconds(Date) - Method in class org.molgenis.charts.highcharts.convert.HighchartSeriesUtil

Convert date to long keeping the timezone valued date.

convertDateToMilliseconds(Date) - Method in class org.molgenis.charts.highcharts.convert.HighchartSeriesUtil

Convert date to long keeping the timezone valued date.

convertValue(MolgenisFieldTypes.FieldTypeEnum, Object) - Method in class org.molgenis.charts.highcharts.convert.HighchartSeriesUtil

Convert values to match the Highcharts demand when using json

createBoxPlotChart(BoxPlotChart) - Method in class org.molgenis.charts.highcharts.convert.HighchartService

Create the Highcharts options from the given BoxPlotChart

createScatterChart(XYDataChart) - Method in class org.molgenis.charts.highcharts.convert.HighchartService

Create a scatter plot When the xAxisType equals MolgenisAxisType.DATETIME then the Highcharts Stockchart will be used to create a plot

createSplitKey(Entity, String) - Method in class org.molgenis.charts.data.ChartDataServiceImpl

createXYDataChart(XYDataChart, ChartConstructorType) - Method in class org.molgenis.charts.highcharts.convert.HighchartService

Create the Highcharts options from the given XYDataChart.

Credits - Class in org.molgenis.charts.highcharts.basic

Credits() - Constructor for class org.molgenis.charts.highcharts.basic.Credits

D

DataMatrix - Class in org.molgenis.charts.data

DataMatrix(List<Target>, List<Target>, List<List<Number>>) - Constructor for class org.molgenis.charts.data.DataMatrix

DataMatrixChart - Class in org.molgenis.charts.charttypes

DataMatrixChart(AbstractChart.MolgenisChartType, DataMatrix) - Constructor for class org.molgenis.charts.charttypes.DataMatrixChart

DEFAULT_HEIGHT - Static variable in class org.molgenis.charts.AbstractChart

DEFAULT_WITH - Static variable in class org.molgenis.charts.AbstractChart

E

equals(Object) - Method in class org.molgenis.charts.data.DataMatrix

equals(Object) - Method in class org.molgenis.charts.data.Target

F

firstQuantile(List<Double>) - Static method in class org.molgenis.charts.calculations.BoxPlotCalcUtil

Get the firstQuantile value thru linear interpolations

G

getAlign() - Method in class org.molgenis.charts.highcharts.basic.AxisTitle

getAlign() - Method in class org.molgenis.charts.highcharts.basic.ChartTitle

getAlign() - Method in class org.molgenis.charts.highcharts.basic.Legend

getAttributeXFieldTypeEnum() - Method in class org.molgenis.charts.data.XYDataSerie

getAttributeYFieldTypeEnum() - Method in class org.molgenis.charts.data.XYDataSerie

getBoxPlotChart(String, String, List<QueryRule>, String, double) - Method in interface org.molgenis.charts.ChartDataService

getBoxPlotChart(String, String, List<QueryRule>, String, double) - Method in class org.molgenis.charts.data.ChartDataServiceImpl

getBoxPlotSeries() - Method in class org.molgenis.charts.BoxPlotChart

getCapabilities() - Method in class org.molgenis.charts.AbstractChartVisualizationService

getCapabilities() - Method in interface org.molgenis.charts.ChartVisualizationService

Gets the chart types this service can render

getCategories() - Method in class org.molgenis.charts.BoxPlotChart

getCategories() - Method in class org.molgenis.charts.highcharts.basic.XAxis

getCategory() - Method in class org.molgenis.charts.highcharts.basic.Point

getChart() - Method in class org.molgenis.charts.highcharts.basic.Options

getChartType(AbstractChart.MolgenisChartType) - Static method in enum org.molgenis.charts.highcharts.basic.ChartType

getColumnTargets() - Method in class org.molgenis.charts.data.DataMatrix

getContentType(String) - Static method in class org.molgenis.charts.MimeTypes

getCredits() - Method in class org.molgenis.charts.highcharts.basic.Options

getData() - Method in class org.molgenis.charts.charttypes.DataMatrixChart

getData() - Method in class org.molgenis.charts.data.BoxPlotSerie

getData() - Method in class org.molgenis.charts.data.XYDataSerie

getData() - Method in class org.molgenis.charts.highcharts.basic.Series

getData() - Method in class org.molgenis.charts.XYDataChart

getDataMatrix(String, List<String>, String, List<QueryRule>) - Method in interface org.molgenis.charts.ChartDataService

getDataMatrix(String, List<String>, String, List<QueryRule>) - Method in class org.molgenis.charts.data.ChartDataServiceImpl

getDefault() - Static method in class org.molgenis.charts.highcharts.basic.ChartTitle

getEnabled() - Method in class org.molgenis.charts.highcharts.basic.Legend

getEnabled() - Method in class org.molgenis.charts.highcharts.basic.Marker

getEntity() - Method in class org.molgenis.charts.requests.ChartRequest

getFile(OutputStream, String, String, HttpServletResponse) - Method in class org.molgenis.charts.ChartController

Gets a file from the filestore.

getHeight() - Method in class org.molgenis.charts.AbstractChart

getHeight() - Method in class org.molgenis.charts.highcharts.basic.BasicChart

getHeight() - Method in class org.molgenis.charts.requests.ChartRequest

getHref() - Method in class org.molgenis.charts.highcharts.basic.Credits

getId() - Method in class org.molgenis.charts.highcharts.basic.Point

getLabel() - Method in class org.molgenis.charts.data.Target

getLayout() - Method in class org.molgenis.charts.highcharts.basic.Legend

"horizontal" or "vertical"

getLegend() - Method in class org.molgenis.charts.highcharts.basic.Options

getLineWidth() - Method in class org.molgenis.charts.highcharts.basic.Series

getMargin() - Method in class org.molgenis.charts.highcharts.basic.AxisTitle

getMargin() - Method in class org.molgenis.charts.highcharts.basic.ChartTitle

getMarginBottom() - Method in class org.molgenis.charts.highcharts.basic.BasicChart

getMarginLeft() - Method in class org.molgenis.charts.highcharts.basic.BasicChart

getMarginRight() - Method in class org.molgenis.charts.highcharts.basic.BasicChart

getMarginTop() - Method in class org.molgenis.charts.highcharts.basic.BasicChart

getMarker() - Method in class org.molgenis.charts.highcharts.basic.Series

getName() - Method in class org.molgenis.charts.data.MolgenisSerie

getName() - Method in class org.molgenis.charts.highcharts.basic.Point

getName() - Method in class org.molgenis.charts.highcharts.basic.Series

getObservableFeature() - Method in class org.molgenis.charts.requests.BoxPlotChartRequest

getOrdinal() - Method in class org.molgenis.charts.highcharts.basic.Axis

getQuery() - Method in class org.molgenis.charts.requests.ChartRequest

getQueryRules() - Method in class org.molgenis.charts.requests.ChartRequest

getRadius() - Method in class org.molgenis.charts.highcharts.basic.Marker

getRowTargets() - Method in class org.molgenis.charts.data.DataMatrix

getScale() - Method in class org.molgenis.charts.charttypes.HeatMapChart

getScale() - Method in class org.molgenis.charts.requests.BoxPlotChartRequest

getScale() - Method in class org.molgenis.charts.requests.HeatMapRequest

getSeries() - Method in class org.molgenis.charts.highcharts.basic.Options

getSeriesType(MolgenisSerieType) - Static method in enum org.molgenis.charts.highcharts.basic.SeriesType

getSplit() - Method in class org.molgenis.charts.requests.BoxPlotChartRequest

getSplit() - Method in class org.molgenis.charts.requests.XYDataChartRequest

getText() - Method in class org.molgenis.charts.highcharts.basic.AxisTitle

getText() - Method in class org.molgenis.charts.highcharts.basic.ChartTitle

getText() - Method in class org.molgenis.charts.highcharts.basic.Credits

getTitle() - Method in class org.molgenis.charts.AbstractChart

getTitle() - Method in class org.molgenis.charts.highcharts.basic.Axis

getTitle() - Method in class org.molgenis.charts.highcharts.basic.Options

getTitle() - Method in class org.molgenis.charts.requests.ChartRequest

getType() - Method in class org.molgenis.charts.AbstractChart

getType() - Method in class org.molgenis.charts.data.MolgenisSerie

getType() - Method in class org.molgenis.charts.highcharts.basic.Axis

getType() - Method in class org.molgenis.charts.highcharts.basic.BasicChart

getType() - Method in class org.molgenis.charts.highcharts.basic.Series

getType(MolgenisFieldTypes.FieldTypeEnum) - Static method in enum org.molgenis.charts.MolgenisAxisType

Get a Molgenis axis type based on an attributeJavaType

getType() - Method in class org.molgenis.charts.requests.ChartRequest

getValues() - Method in class org.molgenis.charts.data.DataMatrix

getVerticalAlign() - Method in class org.molgenis.charts.highcharts.basic.Legend

getVisualizationService(AbstractChart.MolgenisChartType) - Method in class org.molgenis.charts.ChartVisualizationServiceFactory

Gets a visualizationservice for a charttype Throws MolgenisChartException if no service can be found for this charttype

getWidth() - Method in class org.molgenis.charts.AbstractChart

getWidth() - Method in class org.molgenis.charts.highcharts.basic.BasicChart

getWidth() - Method in class org.molgenis.charts.requests.ChartRequest

getX() - Method in class org.molgenis.charts.highcharts.basic.Point

getX() - Method in class org.molgenis.charts.requests.HeatMapRequest

getX() - Method in class org.molgenis.charts.requests.XYDataChartRequest

getxAxis() - Method in class org.molgenis.charts.highcharts.basic.Options

getxAxisLabel() - Method in class org.molgenis.charts.requests.XYDataChartRequest

getxAxisLabel() - Method in class org.molgenis.charts.XYDataChart

getxAxisType() - Method in class org.molgenis.charts.XYDataChart

getxLabel() - Method in class org.molgenis.charts.AbstractChart

getxLabel() - Method in class org.molgenis.charts.requests.ChartRequest

getXvalue() - Method in class org.molgenis.charts.data.XYData

getXYDataChart(String, String, String, String, List<QueryRule>) - Method in interface org.molgenis.charts.ChartDataService

getXYDataChart(String, String, String, String, List<QueryRule>) - Method in class org.molgenis.charts.data.ChartDataServiceImpl

getXYDataSerie(Repository, String, String, String, MolgenisFieldTypes.FieldTypeEnum, MolgenisFieldTypes.FieldTypeEnum, List<QueryRule>) - Method in interface org.molgenis.charts.ChartDataService

getXYDataSerie(Repository, String, String, String, MolgenisFieldTypes.FieldTypeEnum, MolgenisFieldTypes.FieldTypeEnum, List<QueryRule>) - Method in class org.molgenis.charts.data.ChartDataServiceImpl

getxYDataSeries() - Method in class org.molgenis.charts.BoxPlotChart

getXYDataSeries(Repository, String, String, String, MolgenisFieldTypes.FieldTypeEnum, MolgenisFieldTypes.FieldTypeEnum, String, List<QueryRule>) - Method in interface org.molgenis.charts.ChartDataService

getXYDataSeries(Repository, String, String, String, MolgenisFieldTypes.FieldTypeEnum, MolgenisFieldTypes.FieldTypeEnum, String, List<QueryRule>) - Method in class org.molgenis.charts.data.ChartDataServiceImpl

getY() - Method in class org.molgenis.charts.highcharts.basic.Point

getY() - Method in class org.molgenis.charts.requests.HeatMapRequest

getY() - Method in class org.molgenis.charts.requests.XYDataChartRequest

getyAxis() - Method in class org.molgenis.charts.highcharts.basic.Options

getyAxisLabel() - Method in class org.molgenis.charts.requests.XYDataChartRequest

getyAxisLabel() - Method in class org.molgenis.charts.XYDataChart

getyAxisType() - Method in class org.molgenis.charts.XYDataChart

getyLabel() - Method in class org.molgenis.charts.AbstractChart

getyLabel() - Method in class org.molgenis.charts.requests.ChartRequest

getYvalue() - Method in class org.molgenis.charts.data.XYData

H

handleRuntimeException(RuntimeException) - Method in class org.molgenis.charts.ChartController

hashCode() - Method in class org.molgenis.charts.data.DataMatrix

hashCode() - Method in class org.molgenis.charts.data.Target

HeatMapChart - Class in org.molgenis.charts.charttypes

HeatMapChart(DataMatrix) - Constructor for class org.molgenis.charts.charttypes.HeatMapChart

HeatMapRequest - Class in org.molgenis.charts.requests

HeatMapRequest() - Constructor for class org.molgenis.charts.requests.HeatMapRequest

HeatMapScale - Enum in org.molgenis.charts.charttypes

HighchartSeriesUtil - Class in org.molgenis.charts.highcharts.convert

This data util is made for converting the Molgenis charts structure to the Highchart structure

HighchartSeriesUtil() - Constructor for class org.molgenis.charts.highcharts.convert.HighchartSeriesUtil

HighchartService - Class in org.molgenis.charts.highcharts.convert

HighchartService() - Constructor for class org.molgenis.charts.highcharts.convert.HighchartService

I

iqr(double, double) - Static method in class org.molgenis.charts.calculations.BoxPlotCalcUtil

IQR inner quartile range

isEnabled() - Method in class org.molgenis.charts.highcharts.basic.Credits

L

Legend - Class in org.molgenis.charts.highcharts.basic

Legend() - Constructor for class org.molgenis.charts.highcharts.basic.Legend

M

Marker - Class in org.molgenis.charts.highcharts.basic

Marker(Boolean, Integer) - Constructor for class org.molgenis.charts.highcharts.basic.Marker

maximum(List<Double>) - Static method in class org.molgenis.charts.calculations.BoxPlotCalcUtil

Get the maximum value thru linear interpolations

median(List<Double>) - Static method in class org.molgenis.charts.calculations.BoxPlotCalcUtil

Get the median value thru linear interpolations

MimeTypes - Class in org.molgenis.charts

MimeTypes Map

MimeTypes() - Constructor for class org.molgenis.charts.MimeTypes

minimum(List<Double>) - Static method in class org.molgenis.charts.calculations.BoxPlotCalcUtil

Get the minimum value thru linear interpolations

MolgenisAxisType - Enum in org.molgenis.charts

MolgenisChartException - Exception in org.molgenis.charts

MolgenisChartException() - Constructor for exception org.molgenis.charts.MolgenisChartException

MolgenisChartException(String) - Constructor for exception org.molgenis.charts.MolgenisChartException

MolgenisChartException(Throwable) - Constructor for exception org.molgenis.charts.MolgenisChartException

MolgenisChartException(String, Throwable) - Constructor for exception org.molgenis.charts.MolgenisChartException

MolgenisSerie - Class in org.molgenis.charts.data

Molgenis serie

MolgenisSerie() - Constructor for class org.molgenis.charts.data.MolgenisSerie

MolgenisSerieType - Enum in org.molgenis.charts

O

Options - Class in org.molgenis.charts.highcharts.basic

Options() - Constructor for class org.molgenis.charts.highcharts.basic.Options

org.molgenis.charts - package org.molgenis.charts

org.molgenis.charts.calculations - package org.molgenis.charts.calculations

org.molgenis.charts.charttypes - package org.molgenis.charts.charttypes

org.molgenis.charts.data - package org.molgenis.charts.data

org.molgenis.charts.highcharts.basic - package org.molgenis.charts.highcharts.basic

org.molgenis.charts.highcharts.chart - package org.molgenis.charts.highcharts.chart

org.molgenis.charts.highcharts.convert - package org.molgenis.charts.highcharts.convert

org.molgenis.charts.highcharts.stockchart - package org.molgenis.charts.highcharts.stockchart

org.molgenis.charts.r - package org.molgenis.charts.r

org.molgenis.charts.requests - package org.molgenis.charts.requests

org.molgenis.charts.svg - package org.molgenis.charts.svg

P

parseBoxPlotSerieToSeries(BoxPlotSerie) - Method in class org.molgenis.charts.highcharts.convert.HighchartSeriesUtil

Parse the boxPlotSerie to a Series object computable with the Highcharts box plot series standard

parseToBoxPlotSeriesList(List<BoxPlotSerie>) - Method in class org.molgenis.charts.highcharts.convert.HighchartSeriesUtil

Parse the boxPlotSeries objects list to a Series objects list.

parseToXYDataSeriesList(List<XYDataSerie>) - Method in class org.molgenis.charts.highcharts.convert.HighchartSeriesUtil

Parse the xyDataSeries objects list to a Series objects list.

parsexYDataSerieToSeries(XYDataSerie) - Method in class org.molgenis.charts.highcharts.convert.HighchartSeriesUtil

Parse the xYDataSerie to a Series object computable with the Highcharts xy series standard.

parseXYDataToList(List<XYData>, MolgenisFieldTypes.FieldTypeEnum, MolgenisFieldTypes.FieldTypeEnum) - Method in class org.molgenis.charts.highcharts.convert.HighchartSeriesUtil

Parse the x and y data-objects to object computable with the Highcharts scatter plot standard.

Point - Class in org.molgenis.charts.highcharts.basic

Point() - Constructor for class org.molgenis.charts.highcharts.basic.Point

R

RChartService - Class in org.molgenis.charts.r

RChartService(FileStore, FreeMarkerConfigurer, RScriptExecutor) - Constructor for class org.molgenis.charts.r.RChartService

renderChart(AbstractChart, Model) - Method in class org.molgenis.charts.AbstractChartVisualizationService

renderChart(AbstractChart, Model) - Method in interface org.molgenis.charts.ChartVisualizationService

Renders the chart

renderChartInternal(AbstractChart, Model) - Method in class org.molgenis.charts.AbstractChartVisualizationService

renderChartInternal(AbstractChart, Model) - Method in class org.molgenis.charts.highcharts.convert.HighchartService

renderChartInternal(AbstractChart, Model) - Method in class org.molgenis.charts.r.RChartService

renderHeatMap(HeatMapRequest, Model) - Method in class org.molgenis.charts.ChartController

Renders a heatmap with r Returns a piece of javascript that can be retrieved by an html page with an ajax request.

renderPlotBoxChart(BoxPlotChartRequest, Model) - Method in class org.molgenis.charts.ChartController

renderXYDataChart(XYDataChartRequest, Model) - Method in class org.molgenis.charts.ChartController

S

Series - Class in org.molgenis.charts.highcharts.basic

Series() - Constructor for class org.molgenis.charts.highcharts.basic.Series

SeriesType - Enum in org.molgenis.charts.highcharts.basic

setAlign(String) - Method in class org.molgenis.charts.highcharts.basic.AxisTitle

setAlign(AxisAlign) - Method in class org.molgenis.charts.highcharts.basic.AxisTitle

setAlign(ChartAlign) - Method in class org.molgenis.charts.highcharts.basic.ChartTitle

setAlign(String) - Method in class org.molgenis.charts.highcharts.basic.Legend

"left", "center" and "right".

setAttributeXFieldTypeEnum(MolgenisFieldTypes.FieldTypeEnum) - Method in class org.molgenis.charts.data.XYDataSerie

setAttributeYFieldTypeEnum(MolgenisFieldTypes.FieldTypeEnum) - Method in class org.molgenis.charts.data.XYDataSerie

setBoxPlotSeries(List<BoxPlotSerie>) - Method in class org.molgenis.charts.BoxPlotChart

setCategories(List<String>) - Method in class org.molgenis.charts.BoxPlotChart

setCategories(List<String>) - Method in class org.molgenis.charts.highcharts.basic.XAxis

setCategory(String) - Method in class org.molgenis.charts.highcharts.basic.Point

setChart(BasicChart) - Method in class org.molgenis.charts.highcharts.basic.Options

setCredits(Credits) - Method in class org.molgenis.charts.highcharts.basic.Options

setData(List<Double[]>) - Method in class org.molgenis.charts.data.BoxPlotSerie

setData(List<XYData>) - Method in class org.molgenis.charts.data.XYDataSerie

setData(List<Object>) - Method in class org.molgenis.charts.highcharts.basic.Series

setData(List<XYDataSerie>) - Method in class org.molgenis.charts.XYDataChart

setEnabled(boolean) - Method in class org.molgenis.charts.highcharts.basic.Credits

setEnabled(Boolean) - Method in class org.molgenis.charts.highcharts.basic.Legend

setEnabled(Boolean) - Method in class org.molgenis.charts.highcharts.basic.Marker

setEntity(String) - Method in class org.molgenis.charts.requests.ChartRequest

setHeight(int) - Method in class org.molgenis.charts.AbstractChart

setHeight(Integer) - Method in class org.molgenis.charts.highcharts.basic.BasicChart

setHeight(Integer) - Method in class org.molgenis.charts.requests.ChartRequest

setHref(String) - Method in class org.molgenis.charts.highcharts.basic.Credits

setId(String) - Method in class org.molgenis.charts.highcharts.basic.Point

setLayout(String) - Method in class org.molgenis.charts.highcharts.basic.Legend

setLegend(Legend) - Method in class org.molgenis.charts.highcharts.basic.Options

setLineWidth(Integer) - Method in class org.molgenis.charts.highcharts.basic.Series

setMargin(Integer) - Method in class org.molgenis.charts.highcharts.basic.AxisTitle

setMargin(Integer) - Method in class org.molgenis.charts.highcharts.basic.ChartTitle

setMarginBottom(Integer) - Method in class org.molgenis.charts.highcharts.basic.BasicChart

setMarginLeft(Integer) - Method in class org.molgenis.charts.highcharts.basic.BasicChart

setMarginRight(Integer) - Method in class org.molgenis.charts.highcharts.basic.BasicChart

setMarginTop(Integer) - Method in class org.molgenis.charts.highcharts.basic.BasicChart

setMarker(Marker) - Method in class org.molgenis.charts.highcharts.basic.Series

setName(String) - Method in class org.molgenis.charts.data.MolgenisSerie

setName(String) - Method in class org.molgenis.charts.highcharts.basic.Point

setName(String) - Method in class org.molgenis.charts.highcharts.basic.Series

setObservableFeature(String) - Method in class org.molgenis.charts.requests.BoxPlotChartRequest

setOrdinal(Boolean) - Method in class org.molgenis.charts.highcharts.basic.Axis

Works only on Highstock charts

setQuery(QueryImpl) - Method in class org.molgenis.charts.requests.ChartRequest

setQueryRules(List<QueryRule>) - Method in class org.molgenis.charts.requests.ChartRequest

setRadius(Integer) - Method in class org.molgenis.charts.highcharts.basic.Marker

setScale(HeatMapScale) - Method in class org.molgenis.charts.charttypes.HeatMapChart

setScale(Double) - Method in class org.molgenis.charts.requests.BoxPlotChartRequest

setScale(HeatMapScale) - Method in class org.molgenis.charts.requests.HeatMapRequest

setSeries(List<Series>) - Method in class org.molgenis.charts.highcharts.basic.Options

setSplit(String) - Method in class org.molgenis.charts.requests.BoxPlotChartRequest

setSplit(String) - Method in class org.molgenis.charts.requests.XYDataChartRequest

setText(String) - Method in class org.molgenis.charts.highcharts.basic.AxisTitle

setText(String) - Method in class org.molgenis.charts.highcharts.basic.ChartTitle

setText(String) - Method in class org.molgenis.charts.highcharts.basic.Credits

setTitle(String) - Method in class org.molgenis.charts.AbstractChart

setTitle(AxisTitle) - Method in class org.molgenis.charts.highcharts.basic.Axis

setTitle(ChartTitle) - Method in class org.molgenis.charts.highcharts.basic.Options

setTitle(String) - Method in class org.molgenis.charts.requests.ChartRequest

setType(AbstractChart.MolgenisChartType) - Method in class org.molgenis.charts.AbstractChart

setType(MolgenisSerieType) - Method in class org.molgenis.charts.data.MolgenisSerie

setType(String) - Method in class org.molgenis.charts.highcharts.basic.Axis

setType(AxisType) - Method in class org.molgenis.charts.highcharts.basic.Axis

setType(ChartType) - Method in class org.molgenis.charts.highcharts.basic.BasicChart

setType(SeriesType) - Method in class org.molgenis.charts.highcharts.basic.Series

setType(String) - Method in class org.molgenis.charts.requests.ChartRequest

setVerticalAlign(String) - Method in class org.molgenis.charts.highcharts.basic.Legend

"top", "middle" or "bottom".

setWidth(int) - Method in class org.molgenis.charts.AbstractChart

setWidth(Integer) - Method in class org.molgenis.charts.highcharts.basic.BasicChart

setWidth(Integer) - Method in class org.molgenis.charts.requests.ChartRequest

setX(Number) - Method in class org.molgenis.charts.highcharts.basic.Point

setX(List<String>) - Method in class org.molgenis.charts.requests.HeatMapRequest

setX(String) - Method in class org.molgenis.charts.requests.XYDataChartRequest

setxAxes(List<XAxis>) - Method in class org.molgenis.charts.highcharts.basic.Options

setxAxisLabel(String) - Method in class org.molgenis.charts.requests.XYDataChartRequest

setxAxisLabel(String) - Method in class org.molgenis.charts.XYDataChart

setxAxisType(MolgenisAxisType) - Method in class org.molgenis.charts.XYDataChart

setxLabel(String) - Method in class org.molgenis.charts.AbstractChart

setxLabel(String) - Method in class org.molgenis.charts.requests.ChartRequest

setxYDataSeries(List<XYDataSerie>) - Method in class org.molgenis.charts.BoxPlotChart

setY(Number) - Method in class org.molgenis.charts.highcharts.basic.Point

setY(String) - Method in class org.molgenis.charts.requests.HeatMapRequest

setY(String) - Method in class org.molgenis.charts.requests.XYDataChartRequest

setyAxes(List<YAxis>) - Method in class org.molgenis.charts.highcharts.basic.Options

setyAxisLabel(String) - Method in class org.molgenis.charts.requests.XYDataChartRequest

setyAxisLabel(String) - Method in class org.molgenis.charts.XYDataChart

setyAxisType(MolgenisAxisType) - Method in class org.molgenis.charts.XYDataChart

setyLabel(String) - Method in class org.molgenis.charts.AbstractChart

setyLabel(String) - Method in class org.molgenis.charts.requests.ChartRequest

StockChart - Class in org.molgenis.charts.highcharts.stockchart

StockChart() - Constructor for class org.molgenis.charts.highcharts.stockchart.StockChart

SVGEditor - Class in org.molgenis.charts.svg

SVGEditor(File, File) - Constructor for class org.molgenis.charts.svg.SVGEditor

Creates a new instance of SVGEditor.

T

Target - Class in org.molgenis.charts.data

Target(String) - Constructor for class org.molgenis.charts.data.Target

test(HttpServletRequest, Model) - Method in class org.molgenis.charts.ChartController

thirdQuantile(List<Double>) - Static method in class org.molgenis.charts.calculations.BoxPlotCalcUtil

Get the thirdQuantile value thru linear interpolations

toString() - Method in class org.molgenis.charts.charttypes.HeatMapChart

toString() - Method in class org.molgenis.charts.data.DataMatrix

toString() - Method in class org.molgenis.charts.data.Target

toString() - Method in class org.molgenis.charts.data.XYData

toString() - Method in enum org.molgenis.charts.highcharts.basic.AxisAlign

toString() - Method in enum org.molgenis.charts.highcharts.basic.AxisType

toString() - Method in enum org.molgenis.charts.highcharts.basic.ChartAlign

toString() - Method in enum org.molgenis.charts.highcharts.basic.ChartType

toString() - Method in enum org.molgenis.charts.highcharts.basic.SeriesType

U

URI - Static variable in class org.molgenis.charts.ChartController

V

valueOf(String) - Static method in enum org.molgenis.charts.AbstractChart.MolgenisChartType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.charts.charttypes.HeatMapScale

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.charts.highcharts.basic.AxisAlign

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.charts.highcharts.basic.AxisType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.charts.highcharts.basic.ChartAlign

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.charts.highcharts.basic.ChartConstructorType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.charts.highcharts.basic.ChartType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.charts.highcharts.basic.SeriesType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.charts.MolgenisAxisType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.charts.MolgenisSerieType

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.molgenis.charts.AbstractChart.MolgenisChartType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.charts.charttypes.HeatMapScale

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.charts.highcharts.basic.AxisAlign

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.charts.highcharts.basic.AxisType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.charts.highcharts.basic.ChartAlign

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.charts.highcharts.basic.ChartConstructorType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.charts.highcharts.basic.ChartType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.charts.highcharts.basic.SeriesType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.charts.MolgenisAxisType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.charts.MolgenisSerieType

Returns an array containing the constants of this enum type, in the order they are declared.

X

XAxis - Class in org.molgenis.charts.highcharts.basic

XAxis() - Constructor for class org.molgenis.charts.highcharts.basic.XAxis

XYData - Class in org.molgenis.charts.data

Data for charts that use xy point data like a linechart.

XYData(Object, Object) - Constructor for class org.molgenis.charts.data.XYData

XYDataChart - Class in org.molgenis.charts

A chart that uses xy data points like a LineChart or BarChart.

XYDataChart(List<XYDataSerie>, MolgenisAxisType, MolgenisAxisType) - Constructor for class org.molgenis.charts.XYDataChart

XYDataChartRequest - Class in org.molgenis.charts.requests

XYDataChartRequest() - Constructor for class org.molgenis.charts.requests.XYDataChartRequest

XYDataSerie - Class in org.molgenis.charts.data

A list of XYData points to be used by XYDataCharts, represents a line/bar

XYDataSerie() - Constructor for class org.molgenis.charts.data.XYDataSerie

Y

YAxis - Class in org.molgenis.charts.highcharts.basic

YAxis() - Constructor for class org.molgenis.charts.highcharts.basic.YAxis

A B C D E F G H I L M O P R S T U V X Y