org.molgenis.charts.svg

Class SVGEditor

java.lang.Object

org.molgenis.charts.svg.SVGEditor

public class SVGEditor
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
SVGEditor(java.io.File inFile, java.io.File outFile) Creates a new instance of SVGEditor.

Method Summary

Methods

Modifier and Type	Method and Description
void	annotateHeatMap(HeatMapChart chart) Can annotate SVG heatmap.plus charts made by R.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SVGEditor

public SVGEditor(java.io.File inFile,
         java.io.File outFile)
          throws java.io.FileNotFoundException,
                 javax.xml.stream.XMLStreamException,
                 javax.xml.stream.FactoryConfigurationError

Creates a new instance of SVGEditor.

Throws:

javax.xml.stream.FactoryConfigurationError

javax.xml.stream.XMLStreamException

java.io.FileNotFoundException

Method Detail

annotateHeatMap

public void annotateHeatMap(HeatMapChart chart)
                     throws javax.xml.stream.XMLStreamException,
                            javax.xml.stream.FactoryConfigurationError,
                            java.io.FileNotFoundException

Can annotate SVG heatmap.plus charts made by R. Reads and writes using StAX, adding row and col attributes to elements corresponding to data points in the heatmap. All indexes can be calculated using nRow, nCol, nRowAnnotations and nColAnnotations.

Parameters:

chart -

Throws:

javax.xml.stream.FactoryConfigurationError

javax.xml.stream.XMLStreamException

java.io.FileNotFoundException