org.molgenis

Class MolgenisOptions

java.lang.Object

org.molgenis.MolgenisOptions

All Implemented Interfaces:

Serializable

public class MolgenisOptions
extends Object
implements Serializable

Option to parameterize the Molgenis and the org.molgenis.framework.server.MolgenisServer

Author:

Morris Swertz

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
ArrayList<String>	authorizable
boolean	block_webspiders
static String	CLASS_PER_TABLE
String	db_filepath Path where file attachments (<field type="file" ...
String	decorator_overriders Class folder with overrides for decorators
boolean	delete_generated_folder
boolean	disable_decorators
boolean	exclude_system Advanced option: skip entities marked as 'system="true"'
boolean	generate_db
boolean	generate_entityio
boolean	generate_jpa
boolean	generate_jpa_repository_source
boolean	generate_model
boolean	generate_persistence
boolean	generate_tests
static String	HIERARCHY_PER_TABLE
ArrayList<String>	import_model_database relative paths to the data model XML files, objects in these files are used only, not generated
boolean	jpa_use_sequence
ArrayList<String>	model_database relative paths to the data model XML files.
String	object_relational_mapping Advanced option: Type of object relational mapping.
String	output_dir
String	output_doc Source directory for generated doc
String	output_hand Source directory for handwritten java
String	output_sql Source directory for generated sql
String	output_src Source directory for generated java
String	output_web Source directory for web content
String	path
static String	SUBCLASS_PER_TABLE

Constructor Summary

Constructors

Constructor and Description
MolgenisOptions() Initialize with the defaults
MolgenisOptions(Properties properties) Initialize options from properties object

Method Summary

Modifier and Type	Method and Description
String	getDbFilepath()
ArrayList<String>	getModelDatabase()
String	getMolgenis_properties()
String	getObjectRelationalMapping()
Map<String,Object>	getOptionsAsMap() Get the options as a map, used in the UsedMolgenisOptionsGen.ftl template
String	getOutputDoc()
String	getOutputHand()
String	getOutputSql()
String	getOutputSrc()
String	getOutputWeb()
String	getPath()
boolean	isDisable_decorators()
boolean	isExcludeSystem()
void	setDbFilepath(String db_filepath)
void	setDisable_decorators(boolean disable_decorators)
void	setExcludeSystem(boolean exclude_system)
void	setGenerateTests(boolean generate_tests)
void	setModelDatabase(ArrayList<String> model_database)
void	setModelDatabase(String model_database)
void	setMolgenis_properties(String molgenisProperties)
void	setObjectRelationalMapping(String object_relational_mapping)
void	setOutputDoc(String output_doc)
void	setOutputHand(String output_hand)
void	setOutputSql(String output_sql)
void	setOutputSrc(String output_src)
void	setOutputWeb(String output_web)
void	setPath(String path)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

CLASS_PER_TABLE

public static final String CLASS_PER_TABLE

See Also:

Constant Field Values

SUBCLASS_PER_TABLE

public static final String SUBCLASS_PER_TABLE

See Also:

Constant Field Values

HIERARCHY_PER_TABLE

public static final String HIERARCHY_PER_TABLE

See Also:

Constant Field Values

model_database

public ArrayList<String> model_database

relative paths to the data model XML files. Discussion: is COLLECTION good enough here?

import_model_database

public ArrayList<String> import_model_database

relative paths to the data model XML files, objects in these files are used only, not generated

output_dir

public String output_dir

output_src

public String output_src

Source directory for generated java

output_hand

public String output_hand

Source directory for handwritten java

output_sql

public String output_sql

Source directory for generated sql

output_doc

public String output_doc

Source directory for generated doc

output_web

public String output_web

Source directory for web content

decorator_overriders

public String decorator_overriders

Class folder with overrides for decorators

db_filepath

public String db_filepath

Path where file attachments (<field type="file" ... >) should be stored.

object_relational_mapping

public String object_relational_mapping

Advanced option: Type of object relational mapping.

generate_persistence

public boolean generate_persistence

generate_jpa

public boolean generate_jpa

jpa_use_sequence

public boolean jpa_use_sequence

generate_db

public boolean generate_db

exclude_system

public boolean exclude_system

Advanced option: skip entities marked as 'system="true"'

generate_entityio

public boolean generate_entityio

generate_tests

public boolean generate_tests

generate_model

public boolean generate_model

delete_generated_folder

public boolean delete_generated_folder

authorizable

public ArrayList<String> authorizable

disable_decorators

public boolean disable_decorators

block_webspiders

public boolean block_webspiders

generate_jpa_repository_source

public boolean generate_jpa_repository_source

path

public String path

Constructor Detail

MolgenisOptions

public MolgenisOptions()

Initialize with the defaults

MolgenisOptions

public MolgenisOptions(Properties properties)

Initialize options from properties object

Parameters:

properties -

Throws:

IOException

FileNotFoundException

CmdLineException

Method Detail

getOptionsAsMap

public Map<String,Object> getOptionsAsMap()
                                   throws Exception

Get the options as a map, used in the UsedMolgenisOptionsGen.ftl template

Returns:

Throws:

Exception

toString

public String toString()

Overrides:

toString in class Object

getModelDatabase

public ArrayList<String> getModelDatabase()

setModelDatabase

public void setModelDatabase(ArrayList<String> model_database)

setModelDatabase

public void setModelDatabase(String model_database)

getOutputSrc

public String getOutputSrc()

setOutputSrc

public void setOutputSrc(String output_src)

getOutputHand

public String getOutputHand()

setOutputHand

public void setOutputHand(String output_hand)

getOutputSql

public String getOutputSql()

setOutputSql

public void setOutputSql(String output_sql)

getOutputDoc

public String getOutputDoc()

setOutputDoc

public void setOutputDoc(String output_doc)

getOutputWeb

public String getOutputWeb()

setOutputWeb

public void setOutputWeb(String output_web)

getDbFilepath

public String getDbFilepath()

setDbFilepath

public void setDbFilepath(String db_filepath)

getObjectRelationalMapping

public String getObjectRelationalMapping()

setObjectRelationalMapping

public void setObjectRelationalMapping(String object_relational_mapping)

isExcludeSystem

public boolean isExcludeSystem()

setExcludeSystem

public void setExcludeSystem(boolean exclude_system)

getPath

public String getPath()

setPath

public void setPath(String path)

getMolgenis_properties

public String getMolgenis_properties()

setMolgenis_properties

public void setMolgenis_properties(String molgenisProperties)

isDisable_decorators

public boolean isDisable_decorators()

setDisable_decorators

public void setDisable_decorators(boolean disable_decorators)

setGenerateTests

public void setGenerateTests(boolean generate_tests)