org.molgenis

Class MolgenisOptions

java.lang.Object

org.molgenis.MolgenisOptions

All Implemented Interfaces:

Serializable

public class MolgenisOptions
extends Object
implements Serializable

Option to parameterize the Molgenis and the org.molgenis.framework.server.MolgenisServer

Author:

Morris Swertz

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
ArrayList<String>	authorizable
boolean	block_webspiders
static String	CLASS_PER_TABLE
String	db_filepath Path where file attachments (<field type="file" ...
String	decorator_overriders Class folder with overrides for decorators
boolean	delete_generated_folder
boolean	disable_decorators
boolean	exclude_system Advanced option: skip entities marked as 'system="true"'
boolean	generate_db
boolean	generate_entityio
boolean	generate_jpa
boolean	generate_jpa_repository_source
boolean	generate_model
boolean	generate_persistence
boolean	generate_tests
static String	HIERARCHY_PER_TABLE
ArrayList<String>	import_model_database relative paths to the data model XML files, objects in these files are used only, not generated
boolean	jpa_use_sequence
ArrayList<String>	model_database relative paths to the data model XML files.
String	object_relational_mapping Advanced option: Type of object relational mapping.
String	output_dir
String	output_doc Source directory for generated doc
String	output_hand Source directory for handwritten java
String	output_sql Source directory for generated sql
String	output_src Source directory for generated java
String	output_web Source directory for web content
String	path
static String	SUBCLASS_PER_TABLE

Constructor Summary

Constructors

Constructor and Description
MolgenisOptions() Initialize with the defaults
MolgenisOptions(Properties properties) Initialize options from properties object
MolgenisOptions(String propertiesFile) Initialize options from properties file

Method Summary

Modifier and Type	Method and Description
String	getDbFilepath()
ArrayList<String>	getModelDatabase()
String	getMolgenis_properties()
String	getObjectRelationalMapping()
Map<String,Object>	getOptionsAsMap() Get the options as a map, used in the UsedMolgenisOptionsGen.ftl template
String	getOutputDoc()
String	getOutputHand()
String	getOutputSql()
String	getOutputSrc()
String	getOutputWeb()
String	getPath()
boolean	isDisable_decorators()
boolean	isExcludeSystem()
void	setDbFilepath(String db_filepath)
void	setDisable_decorators(boolean disable_decorators)
void	setExcludeSystem(boolean exclude_system)
void	setGenerateTests(boolean generate_tests)
void	setModelDatabase(ArrayList<String> model_database)
void	setModelDatabase(String model_database)
void	setMolgenis_properties(String molgenisProperties)
void	setObjectRelationalMapping(String object_relational_mapping)
void	setOutputDoc(String output_doc)
void	setOutputHand(String output_hand)
void	setOutputSql(String output_sql)
void	setOutputSrc(String output_src)
void	setOutputWeb(String output_web)
void	setPath(String path)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

CLASS_PER_TABLE

public static final String CLASS_PER_TABLE

See Also:

Constant Field Values

SUBCLASS_PER_TABLE

public static final String SUBCLASS_PER_TABLE

See Also:

Constant Field Values

HIERARCHY_PER_TABLE

public static final String HIERARCHY_PER_TABLE

See Also:

Constant Field Values

model_database

public ArrayList<String> model_database

relative paths to the data model XML files. Discussion: is COLLECTION good enough here?

import_model_database

public ArrayList<String> import_model_database

relative paths to the data model XML files, objects in these files are used only, not generated

output_dir

public String output_dir

output_src

public String output_src

Source directory for generated java

output_hand

public String output_hand

Source directory for handwritten java

output_sql

public String output_sql

Source directory for generated sql

output_doc

public String output_doc

Source directory for generated doc

output_web

public String output_web

Source directory for web content

decorator_overriders

public String decorator_overriders

Class folder with overrides for decorators

db_filepath

public String db_filepath

Path where file attachments (<field type="file" ... >) should be stored.

object_relational_mapping

public String object_relational_mapping

Advanced option: Type of object relational mapping.

generate_persistence

public boolean generate_persistence

generate_jpa

public boolean generate_jpa

jpa_use_sequence

public boolean jpa_use_sequence

generate_db

public boolean generate_db

exclude_system

public boolean exclude_system

Advanced option: skip entities marked as 'system="true"'

generate_entityio

public boolean generate_entityio

generate_tests

public boolean generate_tests

generate_model

public boolean generate_model

delete_generated_folder

public boolean delete_generated_folder

authorizable

public ArrayList<String> authorizable

disable_decorators

public boolean disable_decorators

block_webspiders

public boolean block_webspiders

generate_jpa_repository_source

public boolean generate_jpa_repository_source

path

public String path

Constructor Detail

MolgenisOptions

public MolgenisOptions()

Initialize with the defaults

MolgenisOptions

public MolgenisOptions(String propertiesFile)
                throws FileNotFoundException,
                       IOException,
                       CmdLineException

Initialize options from properties file

Parameters:

propertiesFile - the path string to molgenis.properties file

Throws:

IOException

FileNotFoundException

CmdLineException

MolgenisOptions

public MolgenisOptions(Properties properties)

Initialize options from properties object

Parameters:

properties -

Throws:

IOException

FileNotFoundException

CmdLineException

Method Detail

getOptionsAsMap

public Map<String,Object> getOptionsAsMap()
                                   throws Exception

Get the options as a map, used in the UsedMolgenisOptionsGen.ftl template

Returns:

Throws:

Exception

toString

public String toString()

Overrides:

toString in class Object

getModelDatabase

public ArrayList<String> getModelDatabase()

setModelDatabase

public void setModelDatabase(ArrayList<String> model_database)

setModelDatabase

public void setModelDatabase(String model_database)

getOutputSrc

public String getOutputSrc()

setOutputSrc

public void setOutputSrc(String output_src)

getOutputHand

public String getOutputHand()

setOutputHand

public void setOutputHand(String output_hand)

getOutputSql

public String getOutputSql()

setOutputSql

public void setOutputSql(String output_sql)

getOutputDoc

public String getOutputDoc()

setOutputDoc

public void setOutputDoc(String output_doc)

getOutputWeb

public String getOutputWeb()

setOutputWeb

public void setOutputWeb(String output_web)

getDbFilepath

public String getDbFilepath()

setDbFilepath

public void setDbFilepath(String db_filepath)

getObjectRelationalMapping

public String getObjectRelationalMapping()

setObjectRelationalMapping

public void setObjectRelationalMapping(String object_relational_mapping)

isExcludeSystem

public boolean isExcludeSystem()

setExcludeSystem

public void setExcludeSystem(boolean exclude_system)

getPath

public String getPath()

setPath

public void setPath(String path)

getMolgenis_properties

public String getMolgenis_properties()

setMolgenis_properties

public void setMolgenis_properties(String molgenisProperties)

isDisable_decorators

public boolean isDisable_decorators()

setDisable_decorators

public void setDisable_decorators(boolean disable_decorators)

setGenerateTests

public void setGenerateTests(boolean generate_tests)