Uses of Class
org.molgenis.model.elements.Model

Packages that use Model

Package	Description
org.molgenis.generators	MOLGENIS generators.
org.molgenis.generators.db	Generates Database backends
org.molgenis.model	MOLGENIS meta model parser.
org.molgenis.model.elements	Currently known model elements like 'entity' and 'field'.

Uses of Model in org.molgenis.generators

Methods in org.molgenis.generators with parameters of type Model

Modifier and Type	Method and Description
void	ForEachEntityGenerator.generate(Model model, MolgenisOptions options)
void	JpaRepositorySourceGen.generate(Model model, MolgenisOptions options)
abstract void	Generator.generate(Model model, MolgenisOptions options)
void	DataTypeGen.generate(Model model, MolgenisOptions options)
void	ForEachMatrixGenerator.generate(Model model, MolgenisOptions options)
protected void	ForEachEntityGenerator.generate(Model model, MolgenisOptions options, boolean generateTests)
void	Generator.generate(Model model, MolgenisOptions options, String generatedPath)
String	GeneratorHelper.getDefault(Model model, Field field) Creates a default value based on the default values set in the model.
FieldType	GeneratorHelper.getFieldType(Model model, Field field)
String	GeneratorHelper.getImports(Model m, Entity e, String subpackage, String suffix)
String	GeneratorHelper.getMysqlType(Model model, Field field) Get the mysql type of a field: VARCHAR, INT, etc.
String	GeneratorHelper.getOracleType(Model model, Field field)
String	GeneratorHelper.getSetType(Model model, Field field) Java setter type of the field, e.g.
List<Entity>	GeneratorHelper.getSubclasses(Entity superclass, Model m)
List<Entity>	GeneratorHelper.getSuperclasses(Entity subclass, Model m)
Field	GeneratorHelper.getXrefField(Model model, Field e)
String	GeneratorHelper.getXsdType(Model model, Field field)

Uses of Model in org.molgenis.generators.db

Methods in org.molgenis.generators.db with parameters of type Model

Modifier and Type	Method and Description
void	JDBCMetaDatabaseGen.generate(Model model, MolgenisOptions options)
void	JpaDatabaseGen.generate(Model model, MolgenisOptions options)
void	DatabaseConfigGen.generate(Model model, MolgenisOptions options)
void	PersistenceGen.generate(Model model, MolgenisOptions options)
void	EntitiesImporterGen.generate(Model model, MolgenisOptions options)
void	EntitiesValidatorGen.generate(Model model, MolgenisOptions options)
void	CrudRepositorySecurityDecoratorGen.generate(Model model, MolgenisOptions options)

Uses of Model in org.molgenis.model

Methods in org.molgenis.model that return Model

Modifier and Type	Method and Description
static Model	MolgenisModel.parse(MolgenisOptions options)
static Model	MolgenisModel.parse(Properties p)
static Model	MolgenisModelParser.parseDbSchema(ArrayList<String> filenames)
static Model	MolgenisModelParser.parseDbSchema(ArrayList<String> filenames, String modelName)
static Model	MolgenisModelParser.parseDbSchema(String xml) Simple parse an xml string

Methods in org.molgenis.model with parameters of type Model

Modifier and Type	Method and Description
static void	MolgenisModelValidator.addInterfaces(Model model) Add interfaces as artificial entities to the model
static void	MolgenisModelValidator.addTypeFieldInSubclasses(Model model) In each entity of an entity subclass hierarchy a 'type' field is added to enable filtering.
static void	MolgenisModelValidator.addXrefLabelsToEntities(Model model)
static void	MolgenisModelValidator.copyDecoratorsToSubclass(Model model)
static void	MolgenisModelValidator.copyDefaultXrefLabels(Model model) Default xref labels can come from: - the xref_entity (or one of its superclasses)
static void	MolgenisModelValidator.copyFieldsToSubclassToEnforceConstraints(Model model) Copy fields to subclasses (redundantly) so this field can be part of an extra constraint.
static void	MolgenisModelValidator.correctXrefCaseSensitivity(Model model) test for case sensitivity
static void	MolgenisModelValidator.createLinkTablesForMrefs(Model model, MolgenisOptions options) Add link tables for many to many relationships A link table entity will have the name of [from_entity]_[to_entity] A link table has two xrefs to the from/to entity respectively The column names are those of the respective fields In case of a self reference, the second column name is '_self'
static void	MolgenisModelValidator.moveMrefsFromInterfaceAndCopyToSubclass(Model model) As mrefs are a linking table between to other tables, interfaces cannot be part of mrefs (as they don't have a linking table).
static Entity	MolgenisModelParser.parseEntity(Model model, Element element)
static void	MolgenisModelParser.parseMatrix(Model model, Element element)
static void	MolgenisModelParser.parseMethod(Model model, Element element)
static void	MolgenisModelParser.parseModule(Model model, Element element)
static void	MolgenisModelParser.parseQuery(Model model, Method method, Element element)
static void	MolgenisModelParser.parseQueryRule(Model model, MethodQuery query, Element element)
static void	MolgenisModelParser.parseReturnType(Model model, Method method, Element element)
static void	MolgenisModelParser.parseView(Model model, Element element)
static List<Entity>	MolgenisModel.sortEntitiesByDependency(List<Entity> entityList, Model model)
static void	MolgenisModelValidator.validate(Model model, MolgenisOptions options)
static void	MolgenisModelValidator.validateExtendsAndImplements(Model model) Validate extends and implements relationships: Do superclasses actually exist Do 'implements' refer to abstract superclasses (interfaces) Do 'extends' refer to non-abstract superclasses Copy primary key to subclass to form parent/child relationships
static void	MolgenisModelValidator.validateForeignKeys(Model model) Validate foreign key relationships: Do the xref_field and xref_label refer to fields actually exist Is the entity refered to non-abstract Does the xref_field refer to a unique field (i.e.
static void	MolgenisModelValidator.validateHideFields(Model model)
static void	MolgenisModelValidator.validateKeys(Model model) Validate the unique constraints Do unique field names refer to existing fields? Is there a unique column id + unique label?
static void	MolgenisModelValidator.validateNamesAndReservedWords(Model model, MolgenisOptions options)
static void	MolgenisModelValidator.validateNameSize(Model model, MolgenisOptions options)
static void	MolgenisModelValidator.validateOveride(Model model) Subclasses can override fields of superclasses.
static void	MolgenisModelValidator.validatePrimaryKeys(Model model)
static void	MolgenisModelValidator.validateViews(Model model) Check if the view objects are an aggregate of known entities.

Uses of Model in org.molgenis.model.elements

Methods in org.molgenis.model.elements that return Model

Modifier and Type	Method and Description
Model	DBSchema.getModel()
Model	Entity.getModel()

Methods in org.molgenis.model.elements with parameters of type Model

Modifier and Type	Method and Description
void	DBSchema.setModel(Model model)

Constructors in org.molgenis.model.elements with parameters of type Model

Constructor and Description
DBSchema(String name, DBSchema parent, Model model) The standard constructor, which links the object in the tree (with the parent parameter).
Module(String name, Model model)