Serialized Form (molgenis-core 1.8.1 API)

Package org.molgenis
- Class org.molgenis.MolgenisOptions extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - molgenis_properties
```
String molgenis_properties
```
      Properties file where this data came from
    - model_database
```
ArrayList<E> model_database
```
      relative paths to the data model XML files. Discussion: is COLLECTION good enough here?
    - import_model_database
```
ArrayList<E> import_model_database
```
      relative paths to the data model XML files, objects in these files are used only, not generated
    - output_dir
```
String output_dir
```
    - output_src
```
String output_src
```
      Source directory for generated java
    - output_hand
```
String output_hand
```
      Source directory for handwritten java
    - output_sql
```
String output_sql
```
      Source directory for generated sql
    - output_doc
```
String output_doc
```
      Source directory for generated doc
    - output_web
```
String output_web
```
      Source directory for web content
    - decorator_overriders
```
String decorator_overriders
```
      Class folder with overrides for decorators
    - db_filepath
```
String db_filepath
```
      Path where file attachments (<field type="file" ... >) should be stored.
    - object_relational_mapping
```
String object_relational_mapping
```
      Advanced option: Type of object relational mapping.
    - generate_persistence
```
boolean generate_persistence
```
    - generate_jpa
```
boolean generate_jpa
```
    - jpa_use_sequence
```
boolean jpa_use_sequence
```
    - generate_db
```
boolean generate_db
```
    - exclude_system
```
boolean exclude_system
```
      Advanced option: skip entities marked as 'system="true"'
    - generate_entityio
```
boolean generate_entityio
```
    - generate_tests
```
boolean generate_tests
```
    - generate_model
```
boolean generate_model
```
    - delete_generated_folder
```
boolean delete_generated_folder
```
    - authorizable
```
ArrayList<E> authorizable
```
    - disable_decorators
```
boolean disable_decorators
```
    - block_webspiders
```
boolean block_webspiders
```
    - generate_jpa_repository_source
```
boolean generate_jpa_repository_source
```
    - path
```
String path
```
Package org.molgenis.fieldtypes
- Class org.molgenis.fieldtypes.BoolField extends FieldType implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.CategoricalField extends XrefField implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.CategoricalMrefField extends MrefField implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.CompoundField extends FieldType implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.DateField extends FieldType implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.DatetimeField extends FieldType implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.DecimalField extends FieldType implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.EmailField extends StringField implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.EnumField extends FieldType implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.FieldType extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - f
```
Field f
```
      For xref purposes we sometimes need a handle of the field this type was defined as part of.
- Class org.molgenis.fieldtypes.FileField extends XrefField implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.HtmlField extends TextField implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.HyperlinkField extends StringField implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.ImageField extends FileField implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.IntField extends FieldType implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.LongField extends FieldType implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.MrefField extends FieldType implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.ScriptField extends TextField implements Serializable
  
  serialVersionUID:
  
  -3323081217879835712L
- Class org.molgenis.fieldtypes.StringField extends FieldType implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.TextField extends FieldType implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.fieldtypes.XrefField extends FieldType implements Serializable
  
  serialVersionUID:
  
  1L
Package org.molgenis.model
- Class org.molgenis.model.MolgenisModelException extends Exception implements Serializable
  
  serialVersionUID:
  
  -4778664169051832691L
Package org.molgenis.model.elements
- Class org.molgenis.model.elements.Dataset extends Object implements Serializable
  
  serialVersionUID:
  
  899485395046608203L
  - Serialized Fields
    - name
```
String name
```
    - entity
```
String entity
```
- Class org.molgenis.model.elements.DBSchema extends SimpleTree<DBSchema> implements Serializable
  
  serialVersionUID:
  
  -6239251669294203517L
  - Serialized Fields
    - modules
```
List<E> modules
```
    - model
```
Model model
```
- Class org.molgenis.model.elements.Entity extends DBSchema implements Serializable
  
  serialVersionUID:
  
  3863969722351309896L
  - Serialized Fields
    - namespace
```
String namespace
```
      namespace, e.g. used for package name
    - description
```
String description
```
      The description of this entity as entered in the meta-file
    - label
```
String label
```
      The label which users will see in the user-interface
    - system
```
boolean system
```
      Indicates whether this entity is system-specific
    - fields
```
Vector<E> fields
```
      List containing all the fields of this entity
    - parents
```
Vector<E> parents
```
    - implements_parents
```
Vector<E> implements_parents
```
      The name of the entity this entity is implementing
    - indices
```
Vector<E> indices
```
      List containing all the indices of this entity
    - unique_fields
```
Vector<E> unique_fields
```
      List containing all the unique fields of this entity (index 0 is the primary key)
    - references
```
Vector<E> references
```
      higly experimental: allows to add lazy load navigation to objects
    - abstract_type
```
boolean abstract_type
```
      Boolean that indicates whether this entity is to be instantiated (abstract, interface).
    - association_type
```
boolean association_type
```
      Boolean indicate whether this is an association table
    - decorator
```
String decorator
```
      Trigger type
    - xrefLabels
```
List<E> xrefLabels
```
      Default label(s) to be used for Xrefs
    - xrefLookupFields
```
List<E> xrefLookupFields
```
      Attributes to be used in xref/mref lookup
    - imported
```
boolean imported
```
    - module
```
Module module
```
    - allocationSize
```
Integer allocationSize
```
- Class org.molgenis.model.elements.Field extends Object implements Serializable
  
  serialVersionUID:
  
  -1879739243713730190L
  - Serialized Fields
    - entity
```
Entity entity
```
    - type
```
FieldType type
```
      The type of this field.
    - name
```
String name
```
      The name of this field, which needs to be unique for the associated entity.
    - label
```
String label
```
      The label of this field, which is used for the user interface.
    - auto
```
boolean auto
```
      Whether this field is auto-assigned by the database.
    - nillable
```
boolean nillable
```
      Whether this field can be NULL in the database.
    - hidden
```
boolean hidden
```
      Whether this field is read-only.
    - readonly
```
boolean readonly
```
      Whether this field is hidden.
    - aggregateable
```
boolean aggregateable
```
    - default_value
```
String default_value
```
      The string that should be set as the default value (is passed to the database ...)
    - description
```
String description
```
      A short description of this field.
    - default_code
```
String default_code
```
    - enum_options
```
Vector<E> enum_options
```
      When this field a of type Type.ENUM, this vector contains the options
    - varchar_length
```
int varchar_length
```
      When this field is of type Type.VARCHAR, this indicates the maximum length of the string.
    - xref_entity
```
String xref_entity
```
      When this field is of type Type.XREF_SINGLE or Type.XREF_MULTIPLE, this is the name of the entity it is referencing.
    - xref_field
```
String xref_field
```
      When this field is of type Type.XREF_SINGLE or Type.XREF_MULTIPLE, this is the name of the field of the entity it is referencing.
    - xref_labels
```
List<E> xref_labels
```
      When this field is of type Type.XREF_SINGLE or Type.XREF_MULTIPLE, this is the label of the reference.
    - xref_cascade
```
boolean xref_cascade
```
      Boolean to indicate cascading delete
    - jpaCascade
```
String jpaCascade
```
      Boolean to indicate cascading delete
    - mref_name
```
String mref_name
```
      When this field is of type Type.XREF_MULTIPLE, this is the name of the link-table.
    - mref_localid
```
String mref_localid
```
    - mref_remoteid
```
String mref_remoteid
```
    - filter
```
boolean filter
```
    - filtertype
```
String filtertype
```
    - filterfield
```
String filterfield
```
    - filtervalue
```
String filtervalue
```
    - system
```
boolean system
```
    - user_data
```
Object user_data
```
      Contains a pointer to some user-data.
    - annotations
```
String annotations
```
      Used to
    - tableName
```
String tableName
```
    - minRange
```
Long minRange
```
    - maxRange
```
Long maxRange
```
- Class org.molgenis.model.elements.FieldWithXrefLabel extends Field implements Serializable
  
  serialVersionUID:
  
  -3365294817917800934L
  - Serialized Fields
    - xref_label_path
```
String xref_label_path
```
- Class org.molgenis.model.elements.Form extends UISchema implements Serializable
  
  serialVersionUID:
  
  -2642011592737487306L
  - Serialized Fields
    - limit
```
int limit
```
    - commandPlugins
```
List<E> commandPlugins
```
    - record
```
Record record
```
    - entity
```
Entity entity
```
    - viewtype
```
Form.ViewType viewtype
```
    - hiddenFields
```
List<E> hiddenFields
```
    - readonly
```
boolean readonly
```
    - header
```
String header
```
      Optional custom header for the selected form screen
    - description
```
String description
```
      Optional description of this form, explaining it in the context of your application
    - filter
```
boolean filter
```
    - filterfield
```
String filterfield
```
    - filtertype
```
String filtertype
```
    - filtervalue
```
String filtervalue
```
    - embedparent
```
boolean embedparent
```
    - embedkeyfield
```
String embedkeyfield
```
    - embedchildname
```
String embedchildname
```
    - embedchild
```
boolean embedchild
```
    - embedparentname
```
String embedparentname
```
    - embedparentfield
```
String embedparentfield
```
    - embedchildfield
```
String embedchildfield
```
    - embedfields
```
String embedfields
```
    - sortby
```
String sortby
```
    - sortorder
```
Form.SortOrder sortorder
```
    - compactView
```
List<E> compactView
```
      Option to have a compact view only showing the assigned fields.. The other fields will be 'collapsed' with a '+' to uncollapse them.
- Class org.molgenis.model.elements.Index extends Object implements Serializable
  
  serialVersionUID:
  
  8774987474903369117L
  - Serialized Fields
    - name
```
String name
```
      The name of the index
    - fields
```
Vector<E> fields
```
      The field within the associated entity the index points to
- Class org.molgenis.model.elements.Matrix extends DBSchema implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - content_entity
```
String content_entity
```
      the entity that is wrapped by this matrix
    - container
```
String container
```
      field of the entity that points to the container
    - content
```
String content
```
      field of the entity that contains the matrix cell values
    - row
```
String row
```
      field that points to the labels of the row
    - col
```
String col
```
      field that points to the labels of the column
    - row_entity
```
String row_entity
```
      override the default xref type of row to use a subclass
    - col_entity
```
String col_entity
```
      override the default xref type of col to use a subclass
- Class org.molgenis.model.elements.Menu extends UISchema implements Serializable
  
  serialVersionUID:
  
  -1842653490799425686L
  - Serialized Fields
    - position
```
Menu.Position position
```
- Class org.molgenis.model.elements.Method extends MethodSchema implements Serializable
  
  serialVersionUID:
  
  2296459638604325393L
  - Serialized Fields
    - description
```
String description
```
    - returntype
```
Entity returntype
```
    - parameters
```
Vector<E> parameters
```
    - query
```
MethodQuery query
```
- Class org.molgenis.model.elements.MethodQuery extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - entity
```
String entity
```
    - rules
```
Vector<E> rules
```
- Class org.molgenis.model.elements.MethodQuery.Rule extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - field
```
String field
```
    - operator
```
String operator
```
    - parameter
```
String parameter
```
- Class org.molgenis.model.elements.MethodSchema extends SimpleTree<MethodSchema> implements Serializable
  
  serialVersionUID:
  
  2513991729164752297L
- Class org.molgenis.model.elements.Model extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - name
```
String name
```
      The name of the model
    - label
```
String label
```
      The pretty label of the model
    - database
```
DBSchema database
```
      The meta model for the database
    - userinterface
```
UISchema userinterface
```
      The meta model for the userinterface
    - methods
```
MethodSchema methods
```
      The meta model for methods
    - database_description
```
String database_description
```
    - userinterface_description
```
String userinterface_description
```
    - processing_description
```
String processing_description
```
- Class org.molgenis.model.elements.Module extends Object implements Serializable
  
  serialVersionUID:
  
  6755412239260236656L
  - Serialized Fields
    - name
```
String name
```
    - label
```
String label
```
    - description
```
String description
```
    - entities
```
List<E> entities
```
- Class org.molgenis.model.elements.Parameter extends Object implements Serializable
  
  serialVersionUID:
  
  -1879739243713730190L
  - Serialized Fields
    - parent
```
Method parent
```
    - type
```
Parameter.Type type
```
      The type of this field.
    - name
```
String name
```
      The name of this field, which needs to be unique for the associated entity.
    - label
```
String label
```
      The label of this field, which is used for the user interface.
    - nillable
```
boolean nillable
```
      Whether this field can be NULL in the database.
    - default_value
```
String default_value
```
      The string that should be set as the default value (is passed to the database ...)
    - description
```
String description
```
      A short description of this field.
    - enum_options
```
List<E> enum_options
```
      When this field a of type Type.ENUM, this vector contains the options
    - varchar_length
```
int varchar_length
```
      When this field is of type Type.VARCHAR, this indicates the maximum length of the string.
    - user_data
```
Object user_data
```
      Contains a pointer to some user-data.
- Class org.molgenis.model.elements.Plugin extends UISchema implements Serializable
  
  serialVersionUID:
  
  -2642011592737487306L
  - Serialized Fields
    - record
```
Record record
```
    - entity
```
Entity entity
```
    - pluginType
```
String pluginType
```
    - readonly
```
boolean readonly
```
    - flavor
```
Plugin.Flavor flavor
```
- Class org.molgenis.model.elements.Processor extends PRSchema implements Serializable
  
  serialVersionUID:
  
  2296459638604325393L
  - Serialized Fields
    - datasets
```
Vector<E> datasets
```
      Deprecated.
- Class org.molgenis.model.elements.PRSchema extends SimpleTree<PRSchema> implements Serializable
  
  serialVersionUID:
  
  2513991729164752297L
- Class org.molgenis.model.elements.Tree extends UISchema implements Serializable
  
  serialVersionUID:
  
  -2642011592737487306L
  - Serialized Fields
    - record
```
Record record
```
    - entity
```
Entity entity
```
    - readonly
```
boolean readonly
```
    - parentField
```
String parentField
```
    - idField
```
String idField
```
    - labelField
```
String labelField
```
- Class org.molgenis.model.elements.UISchema extends SimpleTree<UISchema> implements Serializable
  
  serialVersionUID:
  
  1816308705758091632L
  - Serialized Fields
    - label
```
String label
```
    - namespace
```
String namespace
```
    - group
```
String group
```
    - groupRead
```
String groupRead
```
- Class org.molgenis.model.elements.Unique extends Object implements Serializable
  
  serialVersionUID:
  
  -1201614213585052020L
  - Serialized Fields
    - entity
```
Entity entity
```
      The entity this unique (key) is associated with
    - fields
```
List<E> fields
```
      The fields of the associated entity that make up this unique.
    - subclass
```
boolean subclass
```
      The unique applies only to this entity (under the hood, the constraint is than reduced to include 'type'
    - description
```
String description
```
      A description of this constraint
- Class org.molgenis.model.elements.View extends DBSchema implements Serializable
  
  serialVersionUID:
  
  0L
  - Serialized Fields
    - label
```
String label
```
    - description
```
String description
```
    - entities
```
Vector<E> entities
```
Package org.molgenis.util
- Class org.molgenis.util.CaseInsensitiveLinkedHashMap extends LinkedHashMap<String,V> implements Serializable
  
  serialVersionUID:
  
  -5765647414721292250L
  - Serialized Fields
    - keyMap
```
Map<K,V> keyMap
```
- Class org.molgenis.util.EntityImportedEvent extends org.springframework.context.ApplicationEvent implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - entityId
```
Object entityId
```
    - entityName
```
String entityName
```
- Class org.molgenis.util.HandleRequestDelegationException extends Exception implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.util.LinkableTree extends SimpleTree<T extends Tree<T>> implements Serializable
  
  serialVersionUID:
  
  -351346449721432255L
- Class org.molgenis.util.RScriptException extends Exception implements Serializable
  
  serialVersionUID:
  
  4153215948223170120L
- Class org.molgenis.util.SimpleTree extends Object implements Serializable
  
  serialVersionUID:
  
  7443849689931440159L
  - Serialized Fields
    - name
```
String name
```
      Unique name of this element
    - value
```
Object value
```
      Optional, the value of this element
    - parentName
```
String parentName
```
      parent.name (or null if root element)
    - treeElements
```
Map<K,V> treeElements
```
      map of tree elements (ordered)
- Class org.molgenis.util.ValueLabel extends Object implements Serializable
  
  serialVersionUID:
  
  -6539081630192819896L
  - Serialized Fields
    - label
```
String label
```
      The label
    - value
```
Object value
```
      The value
Package org.molgenis.util.cmdline
- Class org.molgenis.util.cmdline.CmdLineException extends Exception implements Serializable
  
  serialVersionUID:
  
  -8572474027909970735L

Serialized Form

Package org.molgenis

Class org.molgenis.MolgenisOptions extends Object implements Serializable

Serialized Fields

molgenis_properties

model_database

import_model_database

output_dir

output_src

output_hand

output_sql

output_doc

output_web

decorator_overriders

db_filepath

object_relational_mapping

generate_persistence

generate_jpa

jpa_use_sequence

generate_db

exclude_system

generate_entityio

generate_tests

generate_model

delete_generated_folder

authorizable

disable_decorators

block_webspiders

generate_jpa_repository_source

path

Package org.molgenis.fieldtypes

Class org.molgenis.fieldtypes.BoolField extends FieldType implements Serializable

Class org.molgenis.fieldtypes.CategoricalField extends XrefField implements Serializable

Class org.molgenis.fieldtypes.CategoricalMrefField extends MrefField implements Serializable

Class org.molgenis.fieldtypes.CompoundField extends FieldType implements Serializable

Class org.molgenis.fieldtypes.DateField extends FieldType implements Serializable

Class org.molgenis.fieldtypes.DatetimeField extends FieldType implements Serializable

Class org.molgenis.fieldtypes.DecimalField extends FieldType implements Serializable

Class org.molgenis.fieldtypes.EmailField extends StringField implements Serializable

Class org.molgenis.fieldtypes.EnumField extends FieldType implements Serializable

Class org.molgenis.fieldtypes.FieldType extends Object implements Serializable

Serialized Fields

f

Class org.molgenis.fieldtypes.FileField extends XrefField implements Serializable

Class org.molgenis.fieldtypes.HtmlField extends TextField implements Serializable

Class org.molgenis.fieldtypes.HyperlinkField extends StringField implements Serializable

Class org.molgenis.fieldtypes.ImageField extends FileField implements Serializable

Class org.molgenis.fieldtypes.IntField extends FieldType implements Serializable

Class org.molgenis.fieldtypes.LongField extends FieldType implements Serializable

Class org.molgenis.fieldtypes.MrefField extends FieldType implements Serializable

Class org.molgenis.fieldtypes.ScriptField extends TextField implements Serializable

Class org.molgenis.fieldtypes.StringField extends FieldType implements Serializable

Class org.molgenis.fieldtypes.TextField extends FieldType implements Serializable

Class org.molgenis.fieldtypes.XrefField extends FieldType implements Serializable

Package org.molgenis.model

Class org.molgenis.model.MolgenisModelException extends Exception implements Serializable

Package org.molgenis.model.elements

Class org.molgenis.model.elements.Dataset extends Object implements Serializable

Serialized Fields

name

entity

Class org.molgenis.model.elements.DBSchema extends SimpleTree<DBSchema> implements Serializable

Serialized Fields

modules

model

Class org.molgenis.model.elements.Entity extends DBSchema implements Serializable

Serialized Fields

namespace

description

label

system

fields

parents

implements_parents

indices

unique_fields

references

abstract_type

association_type

decorator