A B C D E F G H I L M O P R S W

A

addErrorMessage(ErrorMessageResponse.ErrorMessage) - Method in class org.molgenis.util.ErrorMessageResponse

addErrorMessages(List<ErrorMessageResponse.ErrorMessage>) - Method in class org.molgenis.util.ErrorMessageResponse

afterPropertiesSet() - Method in class org.molgenis.util.GsonFactoryBean

AutoGson - Annotation Type in org.molgenis.gson

Annotation to allow Gson to construct @AutoValue annotated classes

AutoValueTypeAdapterFactory - Class in org.molgenis.gson

AutoValueTypeAdapterFactory() - Constructor for class org.molgenis.gson.AutoValueTypeAdapterFactory

B

BaseHttpMessageConverter<T> - Class in org.molgenis.util

BaseHttpMessageConverter() - Constructor for class org.molgenis.util.BaseHttpMessageConverter

BaseHttpMessageConverter(MediaType...) - Constructor for class org.molgenis.util.BaseHttpMessageConverter

BaseHttpMessageConverter(MediaType) - Constructor for class org.molgenis.util.BaseHttpMessageConverter

C

canRead(Class<?>, MediaType) - Method in class org.molgenis.util.GsonHttpMessageConverter

canWrite(Class<?>, MediaType) - Method in class org.molgenis.util.GsonHttpMessageConverter

CountryCodes - Class in org.molgenis.util

ISO 3166-2 country codes

CountryCodes() - Constructor for class org.molgenis.util.CountryCodes

create(Gson, TypeToken<T>) - Method in class org.molgenis.gson.AutoValueTypeAdapterFactory

D

DEFAULT_CHARSET - Static variable in class org.molgenis.util.BaseHttpMessageConverter

E

equals(Object) - Method in class org.molgenis.framework.ui.MolgenisPlugin

equals(Object) - Method in class org.molgenis.util.ErrorMessageResponse

equals(Object) - Method in class org.molgenis.util.ErrorMessageResponse.ErrorMessage

ErrorMessage(String) - Constructor for class org.molgenis.util.ErrorMessageResponse.ErrorMessage

ErrorMessage(String, Integer) - Constructor for class org.molgenis.util.ErrorMessageResponse.ErrorMessage

ErrorMessageResponse - Class in org.molgenis.util

ErrorMessageResponse() - Constructor for class org.molgenis.util.ErrorMessageResponse

ErrorMessageResponse(ErrorMessageResponse.ErrorMessage) - Constructor for class org.molgenis.util.ErrorMessageResponse

ErrorMessageResponse(List<ErrorMessageResponse.ErrorMessage>) - Constructor for class org.molgenis.util.ErrorMessageResponse

ErrorMessageResponse.ErrorMessage - Class in org.molgenis.util

F

FileUploadUtils - Class in org.molgenis.util

FileUploadUtils() - Constructor for class org.molgenis.util.FileUploadUtils

G

get() - Static method in class org.molgenis.util.CountryCodes

get(String) - Static method in class org.molgenis.util.CountryCodes

getBaseURI() - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

getByteStream() - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

getCertifiedText() - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

getCharacterStream() - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

getCharset(HttpHeaders) - Method in class org.molgenis.util.BaseHttpMessageConverter

getCode() - Method in class org.molgenis.util.ErrorMessageResponse.ErrorMessage

getEncoding() - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

getErrors() - Method in class org.molgenis.util.ErrorMessageResponse

getFingerprint(String) - Method in class org.molgenis.util.ResourceFingerprintRegistry

getFingerprint(Class<?>, String) - Method in class org.molgenis.util.ResourceFingerprintRegistry

getFullUri() - Method in class org.molgenis.framework.ui.MolgenisPlugin

getId() - Method in class org.molgenis.framework.ui.MolgenisPlugin

getInputStream() - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

getMessage() - Method in class org.molgenis.util.ErrorMessageResponse.ErrorMessage

getName() - Method in class org.molgenis.framework.ui.MolgenisPlugin

getObject() - Method in class org.molgenis.util.GsonFactoryBean

Return the created Gson instance.

getObjectType() - Method in class org.molgenis.util.GsonFactoryBean

getOriginalFileName(Part) - Static method in class org.molgenis.util.FileUploadUtils

Get the filename of an uploaded file

getPlugin(String) - Method in interface org.molgenis.framework.ui.MolgenisPluginRegistry

getPlugin(String) - Method in class org.molgenis.framework.ui.MolgenisPluginRegistryImpl

getPublicId() - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

getSchema() - Method in class org.molgenis.util.SchemaLoader

getStringData() - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

getSystemId() - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

getType() - Method in class org.molgenis.util.GsonHttpMessageConverter

getUrl() - Method in class org.molgenis.framework.ui.MolgenisPlugin

GsonFactoryBean - Class in org.molgenis.util

A FactoryBean for creating a Google Gson 2.x Gson instance.

GsonFactoryBean() - Constructor for class org.molgenis.util.GsonFactoryBean

GsonHttpMessageConverter - Class in org.molgenis.util

Converts objects to json string and vica versa If logging is set to debug it will print the incoming and outgoing json strings

GsonHttpMessageConverter(Gson) - Constructor for class org.molgenis.util.GsonHttpMessageConverter

Construct a new GsonHttpMessageConverter.

H

hashCode() - Method in class org.molgenis.framework.ui.MolgenisPlugin

hashCode() - Method in class org.molgenis.util.ErrorMessageResponse.ErrorMessage

hashCode() - Method in class org.molgenis.util.ErrorMessageResponse

I

isDatabasePopulated() - Method in interface org.molgenis.framework.db.WebAppDatabasePopulatorService

isSingleton() - Method in class org.molgenis.util.GsonFactoryBean

iterator() - Method in class org.molgenis.framework.ui.MolgenisPluginRegistryImpl

L

LSInputImpl(String, String, InputStream) - Constructor for class org.molgenis.util.SchemaLoader.LSInputImpl

M

MolgenisPlugin - Class in org.molgenis.framework.ui

MolgenisPlugin(String, String, String, String) - Constructor for class org.molgenis.framework.ui.MolgenisPlugin

MolgenisPluginFactory - Interface in org.molgenis.framework.ui

MolgenisPluginRegistry - Interface in org.molgenis.framework.ui

MolgenisPluginRegistryImpl - Class in org.molgenis.framework.ui

MolgenisPluginRegistryImpl() - Constructor for class org.molgenis.framework.ui.MolgenisPluginRegistryImpl

O

OptionsClass - Annotation Type in org.molgenis.util.cmdline

Option class ? Another kind of option

org.molgenis.framework.db - package org.molgenis.framework.db

org.molgenis.framework.ui - package org.molgenis.framework.ui

org.molgenis.gson - package org.molgenis.gson

org.molgenis.util - package org.molgenis.util

MOLGENIS supporting utilities

org.molgenis.util.cmdline - package org.molgenis.util.cmdline

P

PATTERN_CSS - Static variable in class org.molgenis.framework.ui.ResourcePathPatterns

PATTERN_FONTS - Static variable in class org.molgenis.framework.ui.ResourcePathPatterns

PATTERN_IMG - Static variable in class org.molgenis.framework.ui.ResourcePathPatterns

PATTERN_JS - Static variable in class org.molgenis.framework.ui.ResourcePathPatterns

populateDatabase() - Method in interface org.molgenis.framework.db.WebAppDatabasePopulatorService

R

readInternal(Class<?>, HttpInputMessage) - Method in class org.molgenis.util.GsonHttpMessageConverter

registerPlugin(MolgenisPlugin) - Method in interface org.molgenis.framework.ui.MolgenisPluginRegistry

registerPlugin(MolgenisPlugin) - Method in class org.molgenis.framework.ui.MolgenisPluginRegistryImpl

registerPluginFactory(MolgenisPluginFactory) - Method in interface org.molgenis.framework.ui.MolgenisPluginRegistry

registerPluginFactory(MolgenisPluginFactory) - Method in class org.molgenis.framework.ui.MolgenisPluginRegistryImpl

registerTypeAdapterFactory(TypeAdapterFactory) - Method in class org.molgenis.util.GsonFactoryBean

registerTypeHierarchyAdapter(Class<?>, Object) - Method in class org.molgenis.util.GsonFactoryBean

resolveResource(String, String, String, String, String) - Method in class org.molgenis.util.SchemaLoader

ResourceFingerprintRegistry - Class in org.molgenis.util

ResourceFingerprintRegistry() - Constructor for class org.molgenis.util.ResourceFingerprintRegistry

ResourcePathPatterns - Class in org.molgenis.framework.ui

S

saveToTempFile(Part) - Static method in class org.molgenis.util.FileUploadUtils

Saves an uploaded file to a tempfile with prefix 'molgenis-', keeps the original file extension

saveToTempFolder(Part) - Static method in class org.molgenis.util.FileUploadUtils

Save an Uploaded file to the temp folder keeping it original name

SchemaLoader - Class in org.molgenis.util

Compiles a xsd.

SchemaLoader(String) - Constructor for class org.molgenis.util.SchemaLoader

SchemaLoader(InputStream) - Constructor for class org.molgenis.util.SchemaLoader

SchemaLoader.LSInputImpl - Class in org.molgenis.util

setBaseURI(String) - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

setByteStream(InputStream) - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

setCertifiedText(boolean) - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

setCharacterStream(Reader) - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

setDateFormatPattern(String) - Method in class org.molgenis.util.GsonFactoryBean

Define the date/time format with a SimpleDateFormat-style pattern.

setDisableHtmlEscaping(boolean) - Method in class org.molgenis.util.GsonFactoryBean

Whether to use the GsonBuilder.disableHtmlEscaping() when writing JSON.

setEncoding(String) - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

setInputStream(BufferedInputStream) - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

setPrefixJson(boolean) - Method in class org.molgenis.util.GsonHttpMessageConverter

Indicates whether the JSON output by this view should be prefixed with "{} &&".

setPrettyPrinting(boolean) - Method in class org.molgenis.util.GsonFactoryBean

Whether to use the GsonBuilder.setPrettyPrinting() when writing JSON.

setPublicId(String) - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

setRegisterJavaTimeConverters(boolean) - Method in class org.molgenis.util.GsonFactoryBean

Indicates if the java 8 date time Converters should be registered with Gson.

setSerializeNulls(boolean) - Method in class org.molgenis.util.GsonFactoryBean

Whether to use the GsonBuilder.serializeNulls() option when writing JSON.

setStringData(String) - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

setSystemId(String) - Method in class org.molgenis.util.SchemaLoader.LSInputImpl

setType(Type) - Method in class org.molgenis.util.GsonHttpMessageConverter

supports(Class<?>) - Method in class org.molgenis.util.GsonHttpMessageConverter

W

WebAppDatabasePopulatorService - Interface in org.molgenis.framework.db

writeInternal(Object, HttpOutputMessage) - Method in class org.molgenis.util.GsonHttpMessageConverter

A B C D E F G H I L M O P R S W