A C D E F G H L O P T U

A

add(Stream<Entity>) - Method in class org.molgenis.data.cache.l1.L1CacheRepositoryDecorator

add(Entity) - Method in class org.molgenis.data.cache.l1.L1CacheRepositoryDecorator

afterCommitTransaction(String) - Method in class org.molgenis.data.cache.l2.L2Cache

afterCommitTransaction(String) - Method in class org.molgenis.data.cache.l3.L3Cache

C

CombinedEntityCache - Class in org.molgenis.data.cache.utils

Caches Entitys from different repositories in dehydrated form in a single combined Guava Cache.

CombinedEntityCache(EntityHydration, Cache<EntityKey, Optional<Map<String, Object>>>) - Constructor for class org.molgenis.data.cache.utils.CombinedEntityCache

Creates a new CombinedEntityCache

D

dehydrate(Entity) - Method in class org.molgenis.data.cache.utils.EntityHydration

Creates a Map containing the values required to rebuild this entity.

delegate() - Method in class org.molgenis.data.cache.l1.L1CacheRepositoryDecorator

delegate() - Method in class org.molgenis.data.cache.l2.L2CacheRepositoryDecorator

delegate() - Method in class org.molgenis.data.cache.l3.L3CacheRepositoryDecorator

delete(Entity) - Method in class org.molgenis.data.cache.l1.L1CacheRepositoryDecorator

delete(Stream<Entity>) - Method in class org.molgenis.data.cache.l1.L1CacheRepositoryDecorator

deleteAll(Stream<Object>) - Method in class org.molgenis.data.cache.l1.L1CacheRepositoryDecorator

deleteAll() - Method in class org.molgenis.data.cache.l1.L1CacheRepositoryDecorator

deleteById(Object) - Method in class org.molgenis.data.cache.l1.L1CacheRepositoryDecorator

doCleanupAfterCompletion(String) - Method in class org.molgenis.data.cache.l1.L1Cache

E

EntityHydration - Class in org.molgenis.data.cache.utils

Hydrates and dehydrates entities.

EntityHydration(EntityManager) - Constructor for class org.molgenis.data.cache.utils.EntityHydration

evict(Stream<EntityKey>) - Method in class org.molgenis.data.cache.l1.L1Cache

evict(Stream<EntityKey>) - Method in class org.molgenis.data.cache.utils.CombinedEntityCache

evictAll(EntityType) - Method in class org.molgenis.data.cache.l1.L1Cache

evictAll(EntityType) - Method in class org.molgenis.data.cache.utils.CombinedEntityCache

Evicts all entries from the cache that belong to a certain entityType.

F

findAll(Stream<Object>) - Method in class org.molgenis.data.cache.l1.L1CacheRepositoryDecorator

findAll(Stream<Object>) - Method in class org.molgenis.data.cache.l2.L2CacheRepositoryDecorator

Retrieves multiple entities by id.

findAll(Stream<Object>, Fetch) - Method in class org.molgenis.data.cache.l2.L2CacheRepositoryDecorator

findAll(Query<Entity>) - Method in class org.molgenis.data.cache.l3.L3CacheRepositoryDecorator

Retrieves a List of identifiers from the L3Cache if the Repository is cacheable and the Query is limited (i.e.

findOne(Query<Entity>) - Method in class org.molgenis.data.cache.l3.L3CacheRepositoryDecorator

Retrieves a single identifier from the L3Cache if the Repository is cacheable and hasn't been touched in this transaction.

findOneById(Object) - Method in class org.molgenis.data.cache.l1.L1CacheRepositoryDecorator

findOneById(Object) - Method in class org.molgenis.data.cache.l2.L2CacheRepositoryDecorator

Retrieves a single entity by id.

findOneById(Object, Fetch) - Method in class org.molgenis.data.cache.l2.L2CacheRepositoryDecorator

G

get(String, Object, EntityType) - Method in class org.molgenis.data.cache.l1.L1Cache

Retrieves an entity from the L1 cache based on a combination of entity name and entity id.

get(Repository<Entity>, Object) - Method in class org.molgenis.data.cache.l2.L2Cache

Retrieves an entity from the cache or the underlying repository.

get(Repository<Entity>, Query<Entity>) - Method in class org.molgenis.data.cache.l3.L3Cache

getBatch(Repository<Entity>, Iterable<Object>) - Method in class org.molgenis.data.cache.l2.L2Cache

Retrieves a list of entities from the cache.

getIfPresent(EntityType, Object) - Method in class org.molgenis.data.cache.utils.CombinedEntityCache

Retrieves an entity from the cache if present.

H

hydrate(Map<String, Object>, EntityType) - Method in class org.molgenis.data.cache.utils.EntityHydration

Rehydrate an entity.

L

L1Cache - Class in org.molgenis.data.cache.l1

Caches entities within a transaction to speed up queries within those transactions.

L1Cache(MolgenisTransactionManager, EntityHydration) - Constructor for class org.molgenis.data.cache.l1.L1Cache

L1CacheRepositoryDecorator - Class in org.molgenis.data.cache.l1

Adds, removes and retrieves entities from the L1Cache when a Repository is RepositoryCapability.CACHEABLE.

L1CacheRepositoryDecorator(Repository<Entity>, L1Cache) - Constructor for class org.molgenis.data.cache.l1.L1CacheRepositoryDecorator

L2Cache - Class in org.molgenis.data.cache.l2

In-memory cache of entities read from cacheable repositories.

L2Cache(MolgenisTransactionManager, EntityHydration, TransactionInformation) - Constructor for class org.molgenis.data.cache.l2.L2Cache

L2CacheRepositoryDecorator - Class in org.molgenis.data.cache.l2

Adds, removes and retrieves entities from the L2Cache when a Repository is RepositoryCapability.CACHEABLE.

L2CacheRepositoryDecorator(Repository<Entity>, L2Cache, TransactionInformation) - Constructor for class org.molgenis.data.cache.l2.L2CacheRepositoryDecorator

L3Cache - Class in org.molgenis.data.cache.l3

In-memory Query cache containing Queries and resulting ids from cacheable repositories

L3Cache(MolgenisTransactionManager, TransactionInformation) - Constructor for class org.molgenis.data.cache.l3.L3Cache

L3CacheRepositoryDecorator - Class in org.molgenis.data.cache.l3

Retrieves identifiers from the L3Cache based on a Query if RepositoryCapability.CACHEABLE.

L3CacheRepositoryDecorator(Repository<Entity>, L3Cache, TransactionInformation) - Constructor for class org.molgenis.data.cache.l3.L3CacheRepositoryDecorator

logStatistics() - Method in class org.molgenis.data.cache.l2.L2Cache

Logs cumulative cache statistics for all known caches.

logStatistics() - Method in class org.molgenis.data.cache.l3.L3Cache

Logs cumulative cache statistics for all known caches.

O

org.molgenis.data.cache.l1 - package org.molgenis.data.cache.l1

org.molgenis.data.cache.l2 - package org.molgenis.data.cache.l2

org.molgenis.data.cache.l3 - package org.molgenis.data.cache.l3

org.molgenis.data.cache.utils - package org.molgenis.data.cache.utils

P

put(String, Entity) - Method in class org.molgenis.data.cache.l1.L1Cache

Puts an entity into the L1 cache, if the cache exists for the current thread.

put(Entity) - Method in class org.molgenis.data.cache.utils.CombinedEntityCache

Inserts an entity into the cache.

putDeletion(EntityKey) - Method in class org.molgenis.data.cache.l1.L1Cache

putDeletion(EntityKey) - Method in class org.molgenis.data.cache.utils.CombinedEntityCache

Caches the deletion of an entity instance.

T

transactionStarted(String) - Method in class org.molgenis.data.cache.l1.L1Cache

U

update(Entity) - Method in class org.molgenis.data.cache.l1.L1CacheRepositoryDecorator

update(Stream<Entity>) - Method in class org.molgenis.data.cache.l1.L1CacheRepositoryDecorator

A C D E F G H L O P T U