org.molgenis.data.vcf.format

Class VcfToEntity

java.lang.Object

org.molgenis.data.vcf.format.VcfToEntity

public class VcfToEntity
extends Object

Constructor Summary

Constructors

Constructor and Description
VcfToEntity(String entityName, org.molgenis.vcf.meta.VcfMeta vcfMeta)

Method Summary

Modifier and Type	Method and Description
protected List<Entity>	createSampleEntities(org.molgenis.vcf.VcfRecord vcfRecord, String entityPosAlt, String entityId)
EntityMetaData	getEntityMetaData()
Entity	toEntity(String[] tokens)
Entity	toEntity(org.molgenis.vcf.VcfRecord vcfRecord)
protected void	writeInfoFieldsToEntity(org.molgenis.vcf.VcfRecord vcfRecord, Entity entity)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VcfToEntity

public VcfToEntity(String entityName,
                   org.molgenis.vcf.meta.VcfMeta vcfMeta)

Method Detail

toEntity

public Entity toEntity(String[] tokens)

toEntity

public Entity toEntity(org.molgenis.vcf.VcfRecord vcfRecord)

createSampleEntities

protected List<Entity> createSampleEntities(org.molgenis.vcf.VcfRecord vcfRecord,
                                            String entityPosAlt,
                                            String entityId)

writeInfoFieldsToEntity

protected void writeInfoFieldsToEntity(org.molgenis.vcf.VcfRecord vcfRecord,
                                       Entity entity)

getEntityMetaData

public EntityMetaData getEntityMetaData()